vborincenturion / feeds Goto Github PK

I hope this message finds you well. First and foremost, I wanted to express my deepest gratitude for the incredible work you've put into developing [nombre del proyecto]. It's been an invaluable tool for my research, and I've truly appreciated the effort and dedication you've poured into it.

I wanted to share my experience using the tool and provide some feedback on the process. I recently downloaded the genome of a bacterium in .fna format and a substrate with the proteome in .faa format. Following the instructions provided in the repository, I executed the script with the following command: python feeds.py -t 4 -k bacteria -f_length 100 -d s

However, during execution, I encountered some errors related to enzyme IDs. Specifically, I received an "Entry Error" message indicating that certain IDs did not correspond to any enzyme. Upon further investigation, I noticed that IDs '48', '49' and '51' were causing problems.

Despite facing these challenges, I remain excited about the potential of this project and eager to continue exploring its capabilities. If there are any additional troubleshooting steps or suggestions you can provide to fix these errors, I would greatly appreciate it.

Once again, thank you for your hard work and dedication to the advancement of scientific research. Your contributions have had a significant impact and I am truly grateful for the opportunity to use such a valuable tool.