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View Code? Open in Web Editor NEWSeeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)
License: Other
Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)
License: Other
An error occur at the "%% Extract time series at location indir" section of the sid_main where the "incremental_temporal_update_gpu" is called. In my case the sparse array size of [12837x667785 sparse double] (down from 69GBytes to 1GBytes sparse vs. full array versions) could not be handled.
Just deactivated the "gpu_ids" for this function ONLY.
A more permanent solution would probably be to approach the array split-wise.
Line 268 in 67c3d35
In the paper, the reconstruction is performed on the std image. However, in the code, the reconstruction is performed on the spatial filter computed from NNMF, and I could not find the place where the std image is used. Could you explain this?
@jmmanley wirtes:
SID_output.neur_rad: Might be worth overall checking on this parameter, as it is set multiple times in either Input, SID_output, and opts. There is e.g. a hard-coded value opts.neur_rad = 6.
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