varlociraptor / varlociraptor.github.io Goto Github PK
View Code? Open in Web Editor NEWSources of the Varlociraptor homepage.
Sources of the Varlociraptor homepage.
See [Filtering]({{< ref "filtering.md" >}})
below:
The live website has a part about tmb estimation with an incomplete command example:
https://varlociraptor.github.io/docs/estimating/
Currently, the command reads:
varlociraptor --coding-genome-size 3e7 --tumor-sample tumor --somatic-tumor-events SOMATIC_TUMOR < calls.annotated.bcf > tmb.vl.json
But it should be (with the correct subcommand estimate tmb
included:
varlociraptor estimate tmb --coding-genome-size 3e7 --tumor-sample tumor --somatic-tumor-events SOMATIC_TUMOR < calls.annotated.bcf > tmb.vl.json
As this version of the repo does not contain the respective estimating.md
file (see issue #1 ), providing a PR would mess up your history...?
@johanneskoester are some changes you made in a local checkout missing in this main repo? And is this the one, from which the homepage is generated? Because I can't find estimating.md
in:
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