Using a fresh install of anaconda on a new laptop running Fedora 28, I tried to create a conda environment using the environment.yml file in the ISIS3 directory of a fresh git clone and the error message below was the result.
Has anyone else used the environment.yml file to setup their environment or is everyone else using something internal? And, is there a specific version of conda I should be using? (I'm using 4.5.11
)
(base) bash-4.4$ conda env create -f environment.yml -n ISIS3
Solving environment: failed
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<
Traceback (most recent call last):
File "/home/kberry/anaconda3/lib/python3.7/site-packages/conda/exceptions.py", line 819, in __call__
return func(*args, **kwargs)
File "/home/kberry/anaconda3/lib/python3.7/site-packages/conda_env/cli/main.py", line 74, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/kberry/anaconda3/lib/python3.7/site-packages/conda_env/cli/main_create.py", line 108, in execute
installer.install(prefix, pkg_specs, args, env)
File "/home/kberry/anaconda3/lib/python3.7/site-packages/conda_env/installers/conda.py", line 35, in install
unlink_link_transaction = solver.solve_for_transaction(prune=getattr(args, 'prune', False))
File "/home/kberry/anaconda3/lib/python3.7/site-packages/conda/core/solve.py", line 518, in solve_for_transaction
force_remove, force_reinstall)
File "/home/kberry/anaconda3/lib/python3.7/site-packages/conda/core/solve.py", line 451, in solve_for_diff
final_precs = self.solve_final_state(deps_modifier, prune, ignore_pinned, force_remove)
File "/home/kberry/anaconda3/lib/python3.7/site-packages/conda/core/solve.py", line 180, in solve_final_state
index, r = self._prepare(prepared_specs)
File "/home/kberry/anaconda3/lib/python3.7/site-packages/conda/core/solve.py", line 592, in _prepare
self.subdirs, prepared_specs)
File "/home/kberry/anaconda3/lib/python3.7/site-packages/conda/core/index.py", line 215, in get_reduced_index
new_records = query_all(spec)
File "/home/kberry/anaconda3/lib/python3.7/site-packages/conda/core/index.py", line 184, in query_all
return tuple(concat(future.result() for future in as_completed(futures)))
File "/home/kberry/anaconda3/lib/python3.7/site-packages/conda/core/subdir_data.py", line 95, in query
self.load()
File "/home/kberry/anaconda3/lib/python3.7/site-packages/conda/core/subdir_data.py", line 149, in load
_internal_state = self._load()
File "/home/kberry/anaconda3/lib/python3.7/site-packages/conda/core/subdir_data.py", line 246, in _load
_internal_state = self._process_raw_repodata_str(raw_repodata_str)
File "/home/kberry/anaconda3/lib/python3.7/site-packages/conda/core/subdir_data.py", line 369, in _process_raw_repodata_str
info['fn'] = fn
TypeError: 'NoneType' object does not support item assignment
`$ /home/kberry/anaconda3/bin/conda-env create -f environment.yml -n ISIS3`
environment variables:
CIO_TEST=<not set>
CONDA_AUTO_UPDATE_CONDA=false
CONDA_DEFAULT_ENV=base
CONDA_EXE=/home/kberry/anaconda3/bin/conda
CONDA_PREFIX=/home/kberry/anaconda3
CONDA_PROMPT_MODIFIER=(base)
CONDA_PYTHON_EXE=/home/kberry/anaconda3/bin/python
CONDA_ROOT=/home/kberry/anaconda3
CONDA_SHLVL=1
MANPATH=/usr/share/lmod/lmod/share/man:
MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/
usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core
PATH=/home/kberry/anaconda3/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/b
in:/bin:/usr/local/sbin:/usr/sbin
REQUESTS_CA_BUNDLE=<not set>
SSL_CERT_FILE=<not set>
XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0
XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session1
active environment : base
active env location : /home/kberry/anaconda3
shell level : 1
user config file : /home/kberry/.condarc
populated config files :
conda version : 4.5.11
conda-build version : 3.15.1
python version : 3.7.0.final.0
base environment : /home/kberry/anaconda3 (writable)
channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/free/linux-64
https://repo.anaconda.com/pkgs/free/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
https://repo.anaconda.com/pkgs/pro/linux-64
https://repo.anaconda.com/pkgs/pro/noarch
package cache : /home/kberry/anaconda3/pkgs
/home/kberry/.conda/pkgs
envs directories : /home/kberry/anaconda3/envs
/home/kberry/.conda/envs
platform : linux-64
user-agent : conda/4.5.11 requests/2.19.1 CPython/3.7.0 Linux/4.18.10-200.fc28.x86_64 fedora/28 glibc/2.27
UID:GID : 76399:1800
netrc file : None
offline mode : False
An unexpected error has occurred. Conda has prepared the above report.
If submitted, this report will be used by core maintainers to improve
future releases of conda.
Would you like conda to send this report to the core maintainers?