chemtax-shiny-gui's Introduction

chemtax-shiny-gui

GUI built using R.shiny for CHEMTAX

TODO:

add file uploads

===

if (!require('shiny')) install.packages("shiny")
shiny::runApp("app")

global.R: data prep and library loading ui.R: user interface server.R: server functions

graph TD

fileUpload{{File Upload}}

subgraph user files
  pigmentsUserFile[["pigments.csv"]]
  taxaUserFile[["taxa.csv"]]
end

subgraph R environment
  initRDS["inital env RDS"]
  clusterRDSPath["cluster RDS path"]
end

subgraph server files
  pigmentsFile["pigments_{hash}.csv"]
  taxaFile["taxa_{hash}.csv"]
  clusterRDS[["cluster.rds"]]
  annealRDS[["anneal.rds"]]
end

pigmentsUserFile --> fileUpload 
    fileUpload --> pigmentsFile
    fileUpload --> initRDS
taxaUserFile --> fileUpload 
    fileUpload --> taxaFile


pigmentsFile --> cluster{{cluster}} --> clusterRDS

anneal{{anneal}}

clusterRDSPath --> anneal
clusterRDS --> anneal --> annealRDS

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chemtax-shiny-gui's Issues

sankey diagram

I think it would be interesting to see a sankey diagram of pigments on the left and how they are allocated to different phyto sections on the right as the algorithm runs.

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