ukhsa-collaboration / gene_finder Goto Github PK

Hi,
Thank you for this tool.
I really want it to use it but I havent been able to... Once I run the script I get the following error:

"gene_finder.py: error: unrecognized arguments: –1 ../../PATH/read_1.fastq"
or
"gene_finder.py: error: unrecognized arguments: –fastq_1 ../../PATH/read_1.fastq"

Any idea what is going wrong?
Thanks,
Ricardo

Hi,

I have cloned to git repo, but when I try and run gene_finder, I get the following error message

ImportError: No module named utility_functions

Could you tell me where /how to obtain this module please?

Many thanks,

Mark

Hi there,

We're thinking of putting Gene Finder into a docker container. Do you have any experience running the tool with newer versions of the dependencies?

Thanks in advance,

Emma