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mixs-source's Issues

before folding into GenomicsStandardsConsortium org

  • look for potential problems in log files from make all
  • problems with docs generation and publishing?
  • annotations don't appear in docs (previous appeared as comments)
  • owl artifact looks funny in Protege... named individuals and object properties don't have labels

see also GenomicsStandardsConsortium/mixs#329

generation.log

  • ~ 800 lines of ERROR:root:Multiple slots with URI: https://w3id.org/mixs/terms/...
  • ~ 22k lines of ERROR:root:No PK for quantity_value
    • Expected? From SQL DDL generation?

mkdocs.log

  • ~ 20 lines like Documentation file 'ph.md' contains a link to 'water_ph.md' which is not found in the documentation files
    • from slot utilization mangling?

conversion.log

ERROR:root:No slot_uri for Environmental package                          food-food production facility
Structured comment name                                    prod_label_claims
Package item                                      production labeling claims
Definition                 Labeling claims containing descriptors such as...
Expected value                                                          text
Value syntax                                                          {text}
Example                                                           free range
Section                                                                     
Requirement                                                                X
Preferred unit                                                              
Occurrence                                                                 m
MIXS ID                                                                     
github ticket                                                   MIXS:0001337
Unnamed: 13                                                             #298
Name: 1431, dtype: object
ERROR:root:No slot_uri for Environmental package                                  food-farm environment
Structured comment name                                    prod_label_claims
Package item                                      production labeling claims
Definition                 Labeling claims containing descriptors such as...
Expected value                                                          text
Value syntax                                                          {text}
Example                                                           free range
Section                                                                     
Requirement                                                                X
Preferred unit                                                              
Occurrence                                                                 m
MIXS ID                                                                     
github ticket                                                   MIXS:0001337
Unnamed: 13                                                             #298
Name: 1541, dtype: object

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