tsalo / convert-eprime Goto Github PK

Hi @tsalo

I used convert-eprime for a study that i'm now writing up. I would like to cite it, but I'm unsure what you'd prefer. Do you want to create a citable DOI, or should I just refer to this repo?

Thanks!

• Add unit tests.
• Add CI.

First pass done with text_to_csv and etext_to_rcsv. Need to do text_to_rcsv next and then check over all results.

Hi!

Wanted to let you know of a corner case in your parsing script. Here's the pdb output:

/convert_eprime.py(23)()
-> """
(Pdb) c
Traceback (most recent call last):
File "/usr/lib64/python2.6/pdb.py", line 1296, in main
pdb._runscript(mainpyfile)
File "/usr/lib64/python2.6/pdb.py", line 1215, in _runscript
self.run(statement)
File "/usr/lib64/python2.6/bdb.py", line 372, in run
exec cmd in globals, locals
File "", line 1, in
File "convert_eprime.py", line 395, in
function(*sys.argv[2:])
File "convert_eprime.py", line 122, in text_to_csv
split_header_idx = one_row[j_col].index(": ")
ValueError: substring not found
Uncaught exception. Entering post mortem debugging
Running 'cont' or 'step' will restart the program
/convert_eprime.py(122)text_to_csv()
-> split_header_idx = one_row[j_col].index(": ")
(Pdb) l
117
118 for i_row in range(n_rows):
119 one_row = filtered_data[start_index[i_row]+1:end_index[i_row]]
120 data_by_rows.append(one_row)
121 for j_col in range(len(one_row)):
122 -> split_header_idx = one_row[j_col].index(": ")
123 all_headers.append(one_row[j_col][:split_header_idx])
124
125 unique_headers = list(set(all_headers))
126
127 # Preallocate list of lists composed of NULLs.
(Pdb) one_row
'Experiment: REDACTED', 'SessionDate: xx-xx-xxxx', 'SessionTime: xx:xx:xx', 'RandomSeed: 2079008169', 'Group: 1', 'Subject:123', 'Session: 1', 'runnumber: run5', 'triggersetup: scan start', 'buttonboxline: SRBox line 5', 'Display.RefreshRate: 61.779', 'trigger: 5', 'scanstart1.OnsetDelay: 3', 'scanstart1.OnsetTime: 9638', 'scanstart1.DurationError: -999999', 'scanstart1.RTTime: 56811', 'scanstart1.RT: 47173', 'scanstart1.RESP: 5', 'scanstart2.OnsetDelay: 4', 'scanstart2.OnsetTime: 56820', 'scanstart2.DurationError: -4', 'scanstart3.OnsetDelay: 0', 'scanstart3.OnsetTime: 58816', 'scanstart3.DurationError: 0', 'scanstart4.OnsetDelay: 0', 'scanstart4.OnsetTime: 60816', 'scanstart4.DurationError: 0', 'Goodbye.OnsetDelay: 0', 'Goodbye.OnsetTime: 416816', 'Goodbye.DurationError: 0', 'sscanstart1.OnsetDelay: 0', 'sscanstart1.OnsetTime: 0', 'sscanstart1.DurationError: 0', 'sscanstart1.RTTime: 0', 'sscanstart1.RT: 0', 'sscanstart1.RESP: ', 'sscanstart4.OnsetDelay: 0', 'sscanstart4.OnsetTime: 0', 'sscanstart4.DurationError: 0', 'sscanstart4.RTTime: 0', 'sscanstart4.RT: 0', 'sscanstart4.RESP: ', 'eprimestart1.OnsetDelay: 0', 'eprimestart1.OnsetTime: 0', 'eprimestart1.DurationError: 0', 'eprimestart1.RTTime: 0', 'eprimestart1.RT: 0', 'eprimestart1.RESP: ', 'eprimestart2.OnsetDelay: 0', 'eprimestart2.OnsetTime: 0', 'eprimestart2.DurationError: 0', 'eprimestart3.OnsetDelay: 0', 'eprimestart3.OnsetTime: 0', 'eprimestart3.DurationError: 0', 'eprimestart4.OnsetDelay: 0', 'eprimestart4.OnsetTime: 0', 'eprimestart4.DurationError: 0'

I don't python so I'm not quite sure what it's chocking on, but if I had to guess it would be those "RESP: " headers with no associated value. Note that this was from a successful run and not an aborted one.

Does this work with Eprime 2 (latest version of 2)?

Hi, many thanks for making this code available.
I have run the setup.py to install and am now trying to convert .edat file to text by running the following command:
python ~/convert-eprime-main/convert-eprime/convert.py text_to_csv sub1_run1.edat

i dont get any errors, but it doesnt print any outputs or create any output files either.....
any ideas what i'm doing wrong would be appreciated
thanks
Steve