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ad-atn-biomarkers-and-dnam

Distinct CSF biomarker-associated DNA methylation in Alzheimer's disease and cognitively normal subjects

ad-meta-analysis

ad-meta-analysis-blood

AD meta analysis blood

ad-meta-analysis-blood-by-sex

Distinct sex-specific DNA methylation differences in Alzheimer’s disease

ad-meta-analysis-by-sex

A sex specific meta analysis for AD

bioc2019pancancerstudy

bioc2019pathwaypca

Workshop repository for pathwayPCA at the 2019 Bioconductor conference

blood-dnam-and-incident-dementia

Blood DNA Methylation Signature for Incident Dementia: Evidence from Longitudinal Cohorts

comethdmr

Detect Regions of Concurrent Differential Methylation

comethdmr_bioc2022

coMethDMR Workshop for BioC2022 in Seattle, WA

comethdmr_data

comethdmr_old

dmrcompare

Full package version of the scripts in the DMRcomparePaper repository

dnam-reliability

Critical evaluation of the reliability of DNA methylation probes on the Illumina MethylationEPIC BeadChip microarrays for dementia research

hidrf

hih

lrinteractions

methreg

An R package to assess the regulatory potential of DNA methylation regions or sites on gene transcription

methreg_supplemental

Code used in MethReg article

miami.ad

A repository of the code for the MIAMI-AD shiny server.

moonlightr

organoid-prediction

Code for Colorectal Tumor Organoid Network Analysis and Prediction

pathwaymultiomics

An R Package to Implement the Pathway-Based MiniMax Statistic for Multi-Omics Analysis

pathwaymultiomics_manuscript_supplement

Repository for supplemental material of the pathwayPCA MultiOmics manuscript

pathwaypca

integrative pathway analysis with modern PCA methodology and gene selection

pathwaypca_proteomics_supplement

Workflow Scripts for the PROTEOMICS Manuscript on pathwayPCA

ranktreeensemble

rnaeditr

tcgabiolinks

TCGAbiolinks

tnbc-meta-analysis

Code for TNBC meta-analysis