Topic: sourmash Goto Github
Some thing interesting about sourmash
Some thing interesting about sourmash
sourmash,Working with the outputs of sourmash in R
Organization: arcadia-science
Home Page: https://arcadia-science.github.io/sourmashconsumr/
sourmash,Streaming de Bruijn and Compact de Bruijn Graph Algorithms
User: camillescott
sourmash,Exploring datasette for exploring microbial taxonomy analyses of metagenomes wit hsourmash
User: ctb
sourmash,Storing sourmash signatures/sketches in a SQLite database
User: ctb
sourmash,Greedy iterative clustering of genomes using sourmash
User: ctb
sourmash,Explore microbial contamination in human whole-genome shotgun data sets, using sourmash
User: ctb
Home Page: https://github.com/sourmash-bio/sourmash/issues/3151
sourmash,Download one or more NCBI genomes; includes sourmash plugin.
User: ctb
sourmash,sourmash plugin to filter hashes/k-mers by presence across many sketches
User: ctb
sourmash,Taxonomic breakdown of metagenomes using sourmash.
Organization: dib-lab
sourmash,Tools and scripts for studying the GTDB taxonomy with sourmash
Organization: dib-lab
sourmash,Here we describe an extension of MinHash that permits accurate compositional analysis of metagenomes with low memory and disk requirements.
Organization: dib-lab
Home Page: https://dib-lab.github.io/2020-paper-sourmash-gather
sourmash,Meta-analysis of metagenomes via machine learning and assembly graphs reveals strain switches in Crohnβs disease
Organization: dib-lab
Home Page: https://dib-lab.github.io/2021-paper-ibd/
sourmash,Benchmarking etc code for https://dib-lab.github.io/2022-paper-branchwater-software/
Organization: dib-lab
sourmash,Remove contaminated contigs from genomes using k-mers and taxonomies.
Organization: dib-lab
sourmash,Find disease associations across metagenomes with k-mers using sourmash, and then recover pangenomic accessory elements using spacegraphcats.
Organization: dib-lab
sourmash,map Illumina metagenomes to genomes!
Organization: dib-lab
Home Page: https://dib-lab.github.io/genome-grist/
sourmash,Tools and workflows for evaluating bacterial and archaeal genome contamination with sourmash and GTDB.
Organization: dib-lab
sourmash,Project template for sourmash-based characterization of genomes and metagenomes
Organization: dib-lab
sourmash,Scripts that are useful for sourmash, but not necessarily part of the base command line.
Organization: dib-lab
sourmash,Add colors representing categories in sourmash compare plots.
Organization: dib-lab
sourmash,tools for sourmash-based pangenome analyses
Organization: dib-lab
sourmash,A web component that let you select FastA or FastQ sequence files and creates sketches (KmerMinHash signatures) using Sourmash.
Organization: ebi-metagenomics
sourmash,Poster presented at RECOMB 2017
User: luizirber
sourmash,This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.
User: luizirber
sourmash,Validation and testing for sourmash branchwater
Organization: sourmash-bio
sourmash,Searching large collections of sequencing data with genome-scale queries
Organization: sourmash-bio
Home Page: https://branchwater.sourmash.bio
sourmash,Example workflows and useful scripts for building your own sourmash databases
Organization: sourmash-bio
sourmash,Build sourmash databases for genbank.
Organization: sourmash-bio
sourmash,Quickly search, compare, and analyze genomic and metagenomic data sets.
Organization: sourmash-bio
Home Page: http://sourmash.readthedocs.io/en/latest/
sourmash,Example commands for doing sequence analysis with sourmash
Organization: sourmash-bio
Home Page: https://sourmash-bio.github.io/sourmash-examples/
sourmash,A meta-package to install a number of sourmash plugins!
Organization: sourmash-bio
sourmash,fast, multithreaded sourmash operations: search, compare, and gather.
Organization: sourmash-bio
sourmash,Sketch many files at once
Organization: sourmash-bio
sourmash,template for building sourmash plugins
Organization: sourmash-bio
sourmash,venn diagrams for sourmash sketches! (DEPRECATED)
Organization: sourmash-bio
Home Page: https://github.com/sourmash-bio/sourmash_plugin_betterplot/
sourmash,A database for signatures of public genomic sources
Organization: sourmash-bio
Home Page: https://wort.sourmash.bio
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