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👇 Here are 92 public repositories matching this topic...

acadtags / rare-disease-identification

mimic-iii,Rare disease identification from free-text clinical notes with ontologies and weak supervision

clinical-notes discharge-summaries entity-linking mimic-iii ontology ontology-matching ordo rare-disease umls weak-supervision

acampillos / sepsis-prediction

mimic-iii,Early prediction of sepsis with gradient boosting (XGBoost) and deep learning (LSTM and GRU) using MIMIC-III data.

User: acampillos

lstm clinical-data gru mimic-iii sepsis xgboost time-series-classification

adambanham / icpm2021

mimic-iii,A reproduction repository for MIMIC III ETL

User: adambanham

processmining aws icpm python mimic-iii

agarner18 / respiratory-mortality

mimic-iii,Predict respiratory patient mortality in ICU units using the MIMIC III database

User: agarner18

mimic-iii r sql stacked-ensembles xgboost random-forest ranger support-vector-machines rpart neural-network

akiani / gym-sepsis

mimic-iii,Open AI Gym Environment For MIMIC Dataset Sepsis Patient

User: akiani

ai healthcare machine-learning mimic-iii reinforcement-learning

amin-nejad / mimic-phenotype-classification

mimic-iii,Master's project

User: amin-nejad

mimic-iii nlp nlp-machine-learning python

amin-nejad / mimic-text-generation

mimic-iii,Master's project

User: amin-nejad

mimic-iii python nlp nlp-machine-learning text-generation

anantzoid / medical-diagnosis-learning

mimic-iii,Learning from Discharge Summaries to extract mentioned diagnoses using Hierarchical Attention Model

User: anantzoid

deep-learning rnn pytorch attention-mechanism mimic-iii healthcare clinical-notes

apakbin94 / icu72hreadmissionmimiciii

mimic-iii,Prediction of ICU Readmissions Using Data at Patient Discharge using MIMICIII Database

User: apakbin94

icu-readmission-prediction mimic-iii python3 sql r

archaeoraptor / ami_morality_prediction

mimic-iii,predicting the morality of acute myocardial infarction. 基于机器学习的急性心肌梗死死亡风险预测

User: archaeoraptor

machine-learning mimic-iii mimic medical icu medicare

ccr-cheng / deepnote-gnn-reproduced

mimic-iii,Repo for the final project of UIUC's CS598 Deep Learning for Healthcare to reproduce the DeepNote-GNN model

User: ccr-cheng

gnn mimic-iii readmission-prediction

dmitrykazhdan / meme-rnn-xai

mimic-iii,MEME: Generating RNN Model Explanations via Model Extraction

User: dmitrykazhdan

rnn xai recurrent-neural-networks concept-explanation model-extraction model-explanation interpretability concept-extraction mimic-iii time-series

dubrzr / mimic3-scripts

mimic-iii,

User: dubrzr

mimic-iii physionet

huangxiaoshuo / nihss_ie

mimic-iii,National Institute of Health stroke scale (NIHSS) information extraction from MIMIC-III discharge summary

User: huangxiaoshuo

stroke nihss information-extraction pytorch mimic-iii

itcr-uni-luebeck / mimic2fhir

mimic-iii,mimic2fhir converts data from MIMIC-III database (PostgreSQL) to HL7 FHIR resources.

Organization: itcr-uni-luebeck

mimic-iii fhir

j-crowe / icu_survival_ml_model_comparison

mimic-iii,MIMICIII Sepsis Survival Analysis

User: j-crowe

mimic-iii proposal udacity machine-learning

jacobdeasy / flexible-ehr

mimic-iii,Time-Sensitive Deep Learning for ICU Outcome Prediction Without Variable Selection or Cleaning.

User: jacobdeasy

classification deep-learning embeddings layer-normalization lstm mimic-iii mortality-prediction pytorch recurrent-neural-networks reproducible-research supervised-learning

javiersgjavi / sepsis-review

mimic-iii,Baseline to compare the performance of different models with sepsis data from MIMIC-III database

User: javiersgjavi

baseline data-imputation deep-learning machine-learning mimic-iii sepsis sepsis-data tabular-data review

javiersgjavi / tabular-mimic-iii

mimic-iii,repository for easy generation of tabulated dataset from the MIMIC-III database

User: javiersgjavi

deep-learning machine-learning machine-learning-algorithms mimic-iii uci-machine-learning tabular-data

ji-youn-kim / mimic3_icu_mortality

mimic-iii,

User: ji-youn-kim

artificial-intelligence healthcare mimic-iii logistic-regression gru pytorch

jplasser / cnep

mimic-iii,CNEP (Contrastive Notes Events Pre-training), Contrastive Learning with Clinical Notes and Events Data Pre-training from MIMIC-III

User: jplasser

clip cnep contrastive events mimic-iii natural-language-processing nlp nlproc notes pretrained pytorch

kingrc15 / torchmimic

mimic-iii,PyTorch library for MIMIC III Benchmark experiments

User: kingrc15

Home Page: https://torchmimic.readthedocs.io/en/latest/

clinical decompensation in-hospital-mortality length-of-stay mimic-iii phenotyping pytorch

linzhenyuyuchen / kddmimic

mimic-iii,Pipeline of Data Extraction, Preprocessing, Representation, and Training for MIMIC-III

User: linzhenyuyuchen

Home Page: https://www.cnblogs.com/linzhenyu/tag/MIMIC/

mimic-iii mimic ehr-data

luchang-cs / mtgan

mimic-iii,Code for the paper: Multi-Label Clinical Time-Series Generation via Conditional GAN (IEEE TKDE)

User: luchang-cs

Home Page: https://ieeexplore.ieee.org/document/10236560

gan generative-adversarial-network ehr electronic-health-records conditional-gan imbalanced-data time-series mimic-iii mimic-iv

mathworks / hospitalreadmission_mimic_textanalytics_matlab

mimic-iii,Predict Hospital Readmissions using Text Analytics in MATLAB

Organization: mathworks

text-classification mimic-iii text-analytics matlab natural-language-processing

mit-lcp / bhi-bsn-challenge

mimic-iii,Repository for the IEEE BHI-BSN MIMIC-III Challenge

Organization: mit-lcp

Home Page: https://mimic.physionet.org/events/bhibsn-challenge/

challenge critical-care mimic-iii

mit-lcp / bloatectomy

mimic-iii,A python package for removing duplicate text in clinical notes or other documents

Organization: mit-lcp

mimic-iii mimic python3 python-3 text-mining text-processing text-analysis nlp-resources plagarism plagiarism-evaluation

mit-lcp / mimic-code

mimic-iii,MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

Organization: mit-lcp

Home Page: https://mimic.mit.edu

mimic-iii critical-care icu physionet

mit-lcp / mimic-iii-paper

mimic-iii,Repository for the paper describing MIMIC-III

Organization: mit-lcp

Home Page: http://www.nature.com/articles/sdata201635

mimic-iii physionet icu

mit-lcp / mimic-omop

mimic-iii,Mapping the MIMIC-III database to the OMOP schema

Organization: mit-lcp

omop data-model mimic-iii

mit-lcp / mimic-website

mimic-iii,Website for the MIMIC Critical Care Database (currently version MIMIC-III)

Organization: mit-lcp

Home Page: https://mimic.mit.edu

mimic-iii physionet icu ehr mimic

mit-lcp / mimic-workshop

mimic-iii,Introduction to MIMIC-III, the Critical Care Database

Organization: mit-lcp

mimic-iii physionet

mit-lcp / northstar_mimic_visualization

mimic-iii,Code to extract MIMIC data for the Northstar interactive visualization tool

Organization: mit-lcp

Home Page: http://dsail.csail.mit.edu/index.php/vizdom/

mimic-iii northstar visualization database

mimic-iii,The Shakespeare-Method repository contains the code we used to develop a new method to identify attributed and unattributed potential adverse events using the unstructured notes portion of electronic health records.

Organization: mit-lcp

topic-modeling python postgres latent-dirichlet-allocation scikit-learn mimic-iii ehr-notes ehr medical adverse-events

ncbi-nlp / biosentvec

mimic-iii,BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

Organization: ncbi-nlp

natural-language-processing bionlp fasttext sent2vec sentence-embeddings word-embeddings sentence-similarity pubmed mimic-iii

ncbi-nlp / bluebert

mimic-iii,BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

Organization: ncbi-nlp

Home Page: https://arxiv.org/abs/1906.05474

bert bert-model natural-language-processing pubmed pubmed-abstracts language-model mimic-iii

neelkanwal / attention-based-clinical-note-summarization

mimic-iii,A new approach to extract clinical summaries from discharge notes

User: neelkanwal

attention-mechanism clinical-notes extractive-summarization language-models mimic-iii summarization

nus-mornin-lab / echo-mimiciii

mimic-iii,Transthoracic echocardiography and mortality in sepsis: analysis of the MIMIC-III database

Organization: nus-mornin-lab

Home Page: https://doi.org/10.1007/s00134-018-5208-7

icu sepsis echocardiography mimic-iii

nus-mornin-lab / oxygenation_kc

mimic-iii,Repo for Oxygenation project proposed by KC at Datathon

Organization: nus-mornin-lab

mimic-iii

ratschlab / clinical-embeddings

mimic-iii,Repository for the Paper: „On the Importance of Step-wise Embeddings for Heterogeneous Clinical Time-Series“

Organization: ratschlab

benchmark clinical-data deep-learning embeddings machine-learning sequence-models time-series hirid-dataset mimic-iii clinical-ml

rvandewater / yaib

mimic-iii,🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109

User: rvandewater

Home Page: https://github.com/rvandewater/YAIB/wiki

deep-learning machine-learning clinical-data ehr eicu-crd hirid-dataset mimic-iii mimic-iv amsterdamumcdb clinical-ml

sberbank-ai-lab / mimic.profile

mimic-iii,The benchmark code from Section 4.2 https://arxiv.org/abs/2107.03913

Organization: sberbank-ai-lab

mimic-iii next-diagnosis-prediction python pytorch transformers

spiroganas / mimic3py

mimic-iii,A Python library to load and analyze the MIMIC III Critical Care Database

User: spiroganas

mimic-iii python

uhbristoldatascience / towards-decision-support-icu-discharge

mimic-iii,Public code from paper: 'Towards a decision support tool for intensive care discharge: machine learning algorithm development using electronic healthcare data from MIMIC-III and Bristol, UK'

Organization: uhbristoldatascience

intensive-care mimic-iii