logan's People
logan's Issues
Possibility of decoding/decompressing the sequences from the graph?
Hello,
When looking through the command line options, I didn't find any way how to decompress the reads back to FASTA file. Is there a plan to add the functionality?
Compile error
Hi,
We are trying to install LOGAN in our environment but got the following error while compiling (the "make" step at LOGAN-Graph-Native). Any idea what might got wrong? The gcc used was gcc4.8.2.
Building file: src/mem/memPackStack.c
Invoking: GCC C Compiler
gcc -std=gnu99 -pedantic -pedantic-errors -Wall -Werror -Wshadow -Wdisabled-optimization -O3 -g -fno-tree-vectorize -I"./src" -I"./cliSrc" -c -fmessage-length=0 -MMD -MP -MF"bin/cli/common/mem/memPackStack.d" -MT"bin/cli/common/mem/memPackStack.o" -o "bin/cli/common/mem/memPackStack.o" "src/mem/memPackStack.c"
src/mem/memPackStack.c: In function ‘packStackAllocWithSize’:
src/mem/memPackStack.c:81:31: error: array subscript is above array bounds [-Werror=array-bounds]
int totalSize=PACKSTACK_SIZES[suggestedSizeIndex];
^
cc1: all warnings being treated as errors
Thanks,
Yun Zhang
Research Scientist - Bioinformatics
Corteva Agriscience™, Agriculture Division of DowDuPont™
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