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Importing of OSM data into NoiseModelling running from Docker container fails

NoiseModelling version
3.3.1

Describe the bug
I am trying to run NoiseModelling from Docker container which I initialise as docker run -dt --name noisemodelling -p 9580:9580 --mount type=bind,source="$(pwd)"/data,target=/data tomasanda/noisemodelling:latest

The WPS Builder and GeoServer seem to run OK,  but when I try importing OSM data the container crashes with the error below. I am not proficient with debugging in Java environment, and would highly appreciate any advice on how to overcome this issue. From what I see GDAL is not available in the container.

To Reproduce
Steps to reproduce the behavior:

  1. Download an region from OSM
  2. Import it using WPS
  3. WPS displays "Network error on WPS:Execute request", docker container crashes

Geoserver log

Container error log:


java.lang.UnsatisfiedLinkError: /tmp/spatialite-3.7.22.4-libspatialitejdbc.so: Error loading shared library libgeos_c.so.1: No such file or directory (needed by /tmp/spatialite-3.7.22.4-libspatialitejdbc.so)
20 Feb 11:20:41 DEBUG [data.ogr] - Error initializing GDAL/OGR library
java.lang.UnsatisfiedLinkError: no gdaljni in java.library.path
        at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1871)
        at java.lang.Runtime.loadLibrary0(Runtime.java:870)
        at java.lang.System.loadLibrary(System.java:1124)
        at org.geotools.data.ogr.jni.JniOGRDataStoreFactory.doIsAvailable(JniOGRDataStoreFactory.java:15)
        at org.geotools.data.ogr.OGRDataStoreFactory.isAvailable(OGRDataStoreFactory.java:161)
        at org.geotools.data.ogr.OGRDataStoreFactory.isAvailable(OGRDataStoreFactory.java:150)
        at java.util.stream.ReferencePipeline$2$1.accept(ReferencePipeline.java:174)
        at java.util.stream.ReferencePipeline$2$1.accept(ReferencePipeline.java:175)
        at java.util.Iterator.forEachRemaining(Iterator.java:116)
        at java.util.Spliterators$IteratorSpliterator.forEachRemaining(Spliterators.java:1801)
        at java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:482)
        at java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:472)
        at java.util.stream.ReduceOps$ReduceOp.evaluateSequential(ReduceOps.java:708)
        at java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:234)
        at java.util.stream.ReferencePipeline.collect(ReferencePipeline.java:566)
        at org.geotools.data.DataAccessFinder.getAvailableDataStores(DataAccessFinder.java:199)
        at org.geotools.data.DataStoreFinder.getAvailableDataStores(DataStoreFinder.java:94)
        at org.geotools.data.DataAccessFinder.getAvailableDataStores(DataAccessFinder.java:187)
        at org.vfny.geoserver.util.DataStoreUtils.getAvailableDataStoreFactories(DataStoreUtils.java:320)
        at org.vfny.geoserver.util.DataStoreUtils.aquireFactory(DataStoreUtils.java:142)
        at org.vfny.geoserver.util.DataStoreUtils.getDataAccess(DataStoreUtils.java:75)
        at org.geoserver.catalog.ResourcePool.getDataStore(ResourcePool.java:591)
        at org.geoserver.catalog.impl.DataStoreInfoImpl.getDataStore(DataStoreInfoImpl.java:33)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:498)
        at org.geoserver.catalog.impl.ModificationProxy.invoke(ModificationProxy.java:127)
        at com.sun.proxy.$Proxy28.getDataStore(Unknown Source)
        at org.geoserver.catalog.DataStoreInfo$getDataStore.call(Unknown Source)
        at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47)
        at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:115)
        at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:127)
        at org.noise_planet.noisemodelling.wps.Import_and_Export.Script36.openGeoserverDataStoreConnection(Script36.groovy:128)
        at org.noise_planet.noisemodelling.wps.Import_and_Export.Script36.run(Script36.groovy:141)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:498)
        at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:101)
        at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1217)
        at groovy.lang.MetaClassImpl.invokeMethodClosure(MetaClassImpl.java:1050)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1092)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1041)
        at groovy.lang.Closure.call(Closure.java:405)
        at org.codehaus.groovy.jsr223.GroovyScriptEngineImpl.callGlobal(GroovyScriptEngineImpl.java:394)
        at org.codehaus.groovy.jsr223.GroovyScriptEngineImpl.callGlobal(GroovyScriptEngineImpl.java:388)
        at org.codehaus.groovy.jsr223.GroovyScriptEngineImpl.invokeImpl(GroovyScriptEngineImpl.java:361)
        at org.codehaus.groovy.jsr223.GroovyScriptEngineImpl.invokeFunction(GroovyScriptEngineImpl.java:198)
        at org.geoserver.script.ScriptHook.doInvoke(ScriptHook.java:73)
        at org.geoserver.script.ScriptHook.invoke(ScriptHook.java:56)
        at org.geoserver.script.wps.WpsHook.run(WpsHook.java:173)
        at org.geoserver.script.groovy.GroovyWpsHook.run(GroovyWpsHook.java:39)
        at org.geoserver.script.wps.ScriptProcess.execute(ScriptProcess.java:114)
        at org.geoserver.wps.executor.ProcessStartupFilter$ProcessStartupWrapper.execute(ProcessStartupFilter.java:50)
        at org.geoserver.wps.executor.DefaultProcessManager$ProcessCallable.call(DefaultProcessManager.java:227)
        at org.geoserver.wps.executor.DefaultProcessManager$ProcessCallable.call(DefaultProcessManager.java:195)
        at java.util.concurrent.FutureTask.run(FutureTask.java:266)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
        at java.lang.Thread.run(Thread.java:748)

Expected behavior
I expect successful import of OSM data

Screenshots
If applicable, add screenshots to help explain your problem.

Additional context
Add any other context about the problem here.

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