tjiagom / adni_phenotypes Goto Github PK

Hi, thank you for sharing your work!
I’m currently working with the ADNI dataset and encountered an issue during the preprocessing steps. I have access to the dataset, but I'm struggling to find or generate the 'raw_collated_freesurfer.csv' file. Could you please provide more details on how to obtain or derive this specific file? Additionally, if there are any prerequisites or specific steps I need to follow, I’d appreciate your guidance on that as well.

Thanks!

(adni_phenotypes) F:\2023\code\github\adni_phenotypes-main>python inference.py --dataset_location data/adni_test_scaled_corrected.csv --dataset_id adni
Namespace(dataset_id='adni', dataset_location='data/adni_test_scaled_corrected.csv', device='cuda:1', do_single_pass=False, wb_model_id='2cxy59fk')
wandb: Network error (ProxyError), entering retry loop.
Traceback (most recent call last):
File "inference.py", line 124, in
run_inference(dataset_location=args.dataset_location, dataset_id=args.dataset_id,
File "inference.py", line 60, in run_inference
model = SimpleMLP(dim_in=155, dropout_rate=best_run.config['dropout']).to(device)
File "F:\anaconda3\envs\adni_phenotypes\lib\site-packages\torch\nn\modules\module.py", line 927, in to
return self._apply(convert)
File "F:\anaconda3\envs\adni_phenotypes\lib\site-packages\torch\nn\modules\module.py", line 579, in _apply
module._apply(fn)
File "F:\anaconda3\envs\adni_phenotypes\lib\site-packages\torch\nn\modules\module.py", line 602, in _apply
param_applied = fn(param)
File "F:\anaconda3\envs\adni_phenotypes\lib\site-packages\torch\nn\modules\module.py", line 925, in convert
return t.to(device, dtype if t.is_floating_point() or t.is_complex() else None, non_blocking)
RuntimeError: CUDA error: invalid device ordinal
CUDA kernel errors might be asynchronously reported at some other API call,so the stacktrace below might be incorrect.
For debugging consider passing CUDA_LAUNCH_BLOCKING=1.