Prizms can use existing upstream LODSPeaKrs by referencing them within settings.inc.php.

find: `/home/semantgeo/opt/prizms/lodspeakrs': No such file or directory

/home/bashby/opt
Apache Jena requires the shell environent variable JENAROOT to be set.
For details, see https://github.com/timrdf/csv2rdf4lod-automation/wiki/Apache-Jena
The following command should appear in your data/source/csv2rdf4lod-source-me-as-bashby.sh.

    export JENAROOT=

Add this command to your data/source/csv2rdf4lod-source-me-as-bashby.sh? [y/n] n
We didn't  your data/source/csv2rdf4lod-source-me-as-bashby.sh, so you'll need to make sure you set the paths correctly each time.

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Try to install virtuoso at /opt? (note: sudo *required*) (y/N) y
curl -L -o virtuoso.tar.gz --progress-bar http://sourceforge.net/projects/virtuoso/files/latest/download from /opt
######################################################################## 100.0%
sudo tar xzf virtuoso.tar.gz


sudo aptitude build-dep virtuoso-opensource
Unable to find an archive "stable" for the package "virtuoso-opensource"
Unable to find the source package for "virtuoso-opensource".
Unable to find an archive "stable" for the package "virtuoso-opensource"
Unable to find the source package for "virtuoso-opensource".
No packages will be installed, upgraded, or removed.
0 packages upgraded, 0 newly installed, 0 to remove and 26 not upgraded.
Need to get 0 B of archives. After unpacking 0 B will be used.



sudo dpkg-buildpackage -rfakeroot
dpkg-buildpackage: warning: using a gain-root-command while being root
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): 
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): 
dpkg-buildpackage: source package virtuoso-opensource
dpkg-buildpackage: source version 6.1.6
dpkg-buildpackage: source changed by OpenLink Virtuoso Maintainer <[email protected]>
dpkg-buildpackage: host architecture amd64
 dpkg-source --before-build virtuoso-opensource-6.1.6
dpkg-checkbuilddeps: Unmet build dependencies: gperf (>= 2.7.2) libreadline5-dev
dpkg-buildpackage: warning: Build dependencies/conflicts unsatisfied; aborting.
dpkg-buildpackage: warning: (Use -d flag to override.)
dpkg -i ./virtuoso-opensource_6.1.6_amd64.deb
dpkg: error processing ./virtuoso-opensource_6.1.6_amd64.deb (--install):
 cannot access archive: No such file or directory
Errors were encountered while processing:
 ./virtuoso-opensource_6.1.6_amd64.deb

bash-3.2$ head foaf.rdf.graffle
<plist xmlns:grddl="http://www.w3.org/2003/g/data-view#" version="1.0"
       grddl:transformation="https://raw.github.com/timrdf/vsr/master/src/xsl/grddl/graffle.xsl">
   <dict>

bash-3.2$ open foaf.rdf.graffle

bash-3.2$ head foaf.rdf.graffle

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd">
<plist version="1.0">
<dict>
    <key>ActiveLayerIndex</key>

Prizms deploys DataFAQs services by linking to them from within the htdocs directory, which is currently /var/www

   sudo ln -s /home/semantgeo/opt/prizms/repos/DataFAQs/services /var/www/services

Q: May we link the DataFAQs services from your htdocs directory using the command above? [y/n] y
sudo ln -s /home/semantgeo/opt/prizms/repos/DataFAQs/services /var/www/services
ln: creating symbolic link `/var/www/services': File exists

<http://purl.org/twc/health/source/healthdata-tw-rpi-edu/dataset/cr-full-dump/version/latest> 
dcterms:modified "2013-01-08T19:21:00+00:00"^^xsd:dateTime .
[3/14/13 5:05:01 PM] Tim L: <http://purl.org/twc/health/void> a void:Dataset;
   void:rootResource <http://purl.org/twc/health/void>;
   void:subset       <http://purl.org/twc/health/source/healthdata-tw-rpi-edu/dataset/cr-full-dump>;

git pull

In settings.inc.php, add

$conf['components']['services'][] = '/var/www/visualbox/visualbox/components/services/kubrick_filmography';
$conf['components']['types'][] = '/var/www/visualbox/visualbox/components/types/foaf:Agent';

--------------------------------------------------------------------------------------------------------
You can now visit http://purl.org/twc/semantgeo/ to navigate through your data.
--------------------------------------------------------------------------------------------------------


sudo a2enmod rewrite | grep 'already enabled'

The Apache2 module rewrite needs to be enabled to
run LODSPeaKr.
The rewrite module needs to be enabled, which can be done with the following command:

sudo a2enmod rewrite

Q: May we enable the module above using the command above? [y/n] y
Q: Apache needs to restart for rewrite to take effect. Restart apache? [y/n] y
Okay, we didn't restart Apache, but you'll need to restart it for rewrite to take effect.

sudo a2enmod php5 | grep 'already enabled'

(module php5 is already enabled: Module php5 already enabled)

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LODSPeaKr needs .htaccess
.htaccess files only work if the 'AllowOverride All' directive is set in /etc/apache2/sites-available/default, similar to:

.refresh-prizms-installation
.refresh-prizms-installation
.refresh-prizms-installation
.refresh-prizms-installation

bashby@publicserver:~/prizms/semantgeo$ ./.refresh-prizms-installation pull
./.refresh-prizms-installation: line 3: pushd: /home/lebot/opt/prizms: No such file or directory
Already up-to-date.
./.refresh-prizms-installation: line 3: popd: directory stack empty

mcat-users.xml does not establish you as a manager role.

Q: Please specify a password for administering tomcat (default will be bashby528): deploy FAqT (SADI) Services implemented in Java.
The tomcat6-admin package needs to be installed, which can be done with the following command:

 sudo  apt-get install tomcat6-admin

Q: May we install the package above using the command above? [y/n] y
sudo apt-get install tomcat6-admin

Q: May we try to install the dependencies listed above? (We'll need root for most of them) [y/n] y

[okay] git already available at /usr/bin/git

sudo apt-get install openjdk-6-jre

[okay] awk already available at /usr/bin/awk
[okay] curl already available at /usr/bin/curl

sudo apt-get install raptor-utils


sudo apt-get install unzip


sudo apt-get install screen


sudo apt-get install tidy




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[okay] perl -MCPAN install YAML
[okay] perl -MCPAN install URI::Escape
[okay] perl -MCPAN install Data::Dumper
[okay] perl -MCPAN install HTTP:Config
[okay] perl -MCPAN install LWP:UserAgent
[okay] perl -MCPAN install IO::Socket::SSL
[okay] perl -MCPAN install Text:CSV
[okay] perl -MCPAN install Text::CSV_XS

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sudo apt-get install python-setuptools

[okay] python egg "surf" is already available at  (surf 1)
[okay] python egg "surf.sesame2" is already available at  (surf.sesame2 1)
[okay] python egg "surf.sparql_protocol" is already available at  (surf.sparql.protocol 1)
[okay] python egg "surf.rdflib" is already available at  (surf.rdflib 1)
[okay] python egg "python-dateutil" is already available at  (python.dateutil 1)
[okay] python egg "ckanclient" is already available at  (ckanclient 1)
[okay] git already available at /usr/bin/git
[okay] curl already available at /usr/bin/curl

sudo apt-get install raptor-utils
Could not find rapper on path. Try to install with command shown above? (y/n): 

LODSPeaKr needs to know three (3) URIs to minimally configure itself:

(1/3) At what URL will /var/www/ be available? (e.g. http://localhost/www/)
**Note** DO NOT include 'lodspeakr/' in the URL
(default 'http://localhost/my/data'): 

-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- lebot
Prizms uses the shell environment variable DATAFAQS_HOME
to find the scripts that DataFAQs needs to run.
  see https://github.com/timrdf/DataFAQs/wiki/DATAFAQS-environment-variables

DATAFAQS_HOME is currently set to '/home/nidhirastogi/opt/prizms/repos/DataFAQs' in data/faqs/datafaqs-source-me.sh

Q: May we change DATAFAQS_HOME to '/home/lebot/opt/prizms/repos/DataFAQs' in data/faqs/datafaqs-source-me.sh? [y/n] 

[okay] serdi available at 

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We're all done installing Prizms production environment for the user asthma.

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We're all done installing Prizms development environment for the user difrad.

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Now what?
* Check out the data site http://lod.theasthmafiles.org/
* Check out the SPARQL endpoint http://lod.theasthmafiles.org/sparql
* Start committing DCAT and eparams into github repository [email protected]:difrad/semantic-asthma-files.git

fatal: destination path 'semantic-asthma-files' already exists and is not an empty directory.

It seems that you didn't have permissions to clone [email protected]:difrad/semantic-asthma-files.git
GitHub requires an ssh key to check out a writeable working clone
See https://help.github.com/articles/generating-ssh-keys


[email protected]:difrad/semantic-asthma-files.git is already clone'd into semantic-asthma-files; pull'ing it...
Enter passphrase for key '/home/difrad/.ssh/id_dsa': 
Already up-to-date.

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Prizms uses the shell environment variable CSV2RDF4LOD_BASE_URI
to indicate the Linked Data base URI to use for all datasets that it creates.
  see https://github.com/timrdf/csv2rdf4lod-automation/wiki/Conversion-process-phase:-name
(CSV2RDF4LOD_BASE_URI is already correctly set to 'http://lod.theasthmafiles.org' in data/source/csv2rdf4lod-source-me-for-asthma.sh)

However, the following do not seem to be installed:

[TODO] ln /home/difrad/opt/prizms/repos/DataFAQs/services/sadi/sadi-services.war /var/lib/tomcat6/webapps/

Q: May we try to install the dependencies listed above? (We'll need root for most of them) [y/n] 

Q: May we try to install the dependencies listed above? (We'll need root for most of them) [y/n] y

[okay] git already available at /usr/bin/git
[okay] java already available at /usr/bin/java
[okay] awk already available at /usr/bin/awk
[okay] curl already available at /usr/bin/curl
[okay] rapper already available at /usr/bin/rapper
[okay] unzip already available at /usr/bin/unzip

sudo apt-get install screen

sudo a2enmod proxy_http | grep 'already enabled'

The Apache2 module proxy_http needs to be enabled to
expose your (port 8080) Tomcat application server of SADI services at the URL http://purl.org/twc/semantgeo/sadi-services.
The proxy_http module needs to be enabled, which can be done with the following command:

sudo a2enmod proxy_http

Q: May we enable the module above using the command above? [y/n] y
Q: Apache needs to restart for proxy_http to take effect. Restart apache? [y/n] y
Okay, we didn't restart Apache, but you'll need to restart it for proxy_http to take effect.

sudo easy_install -U ckanclient
Try to install python module ckanclient using the command above? (y/n) y

Prizms encapsulates all of the environment variables and PATH setup that is needed within
a single source-me.sh script dedicated to the user that needs it. The script is version-controlled
so we can manage the environment variables that everybody uses. The single source-me.sh should be the *only*
source-me.sh that is called from your ~/.bashrc. The following command is the only
source-me.sh that you need to run, and should be placed within your ~/.bashrc.

   source /home/semantgeo/prizms/semantgeo/data/source/csv2rdf4lod-source-me-as-semantgeo.sh
grep: /home/semantgeo/.bashrc: No such file or directory

Add this command to your ~/.bashrc? [y/n]

Q: Changes to tomcat require it to restart. Restart it (requires sudo) ? [y/n] y
sudo /etc/init.d/tomcat6 stop
 * Stopping Tomcat servlet engine tomcat6                                                                                                                               [ OK ]
sudo /etc/init.d/tomcat6 start
 * no JDK found - please set JAVA_HOME
[okay] easy_install already available at /usr/local/bin/easy_install

LODSPeaKr lives within the htdocs directory (/var/www),
while your semantgeo Prizms will maintain the model/views within
the version-controlled repository ([email protected]:ashbyb/semantgeo.git).

/var/www/lodspeakr is not set up yet. It can be installed with the command:

 sudo bash -s base-url=http://purl.org/twc/semantgeo -s base-namespace=http://purl.org/twc/semantgeo -s sparql-endpoint=http://purl.org/twc/semantgeo/sparql chown=www-data:semantgeo < <(curl -sL http://lodspeakr.org/install)

Q: Would you like to install LODSPeaKr? [y/n] y
Cloning into lodspeakr...
remote: Counting objects: 5350, done.
remote: Compressing objects: 100% (2804/2804), done.
remote: Total 5350 (delta 2319), reused 5312 (delta 2286)
Receiving objects: 100% (5350/5350), 2.85 MiB | 1.11 MiB/s, done.
Resolving deltas: 100% (2319/2319), done.
Created new configuration file: settings.inc.php

WARNING: Copying root.htaccess as .htaccess in parent directory


WARNING: Automatically changing ownership of cache, meta, components and settings.inc.php to www-data:semantgeo


--------------------------------------------------------------------------------------------------------
You can now visit http://purl.org/twc/semantgeo/ to navigate through your data.
--------------------------------------------------------------------------------------------------------

We've finished setting up your development environment.
The next step is to set up the semantgeo's production environment,
which we can do by running this script again as user semantgeo

Q: Set up the production environment as the semantgeo user? [y/n] y

/home/semantgeo/opt/prizms

sudo su - semantgeo -c cd; mkdir -p opt; cd opt; git clone git://github.com/timrdf/prizms.git
No directory, logging in with HOME=/
fatal: could not create work tree dir 'prizms'.: Permission denied
No directory, logging in with HOME=/
-su: opt/prizms/bin/install.sh: not found

However, the following do not seem to be installed:

[TODO] curl -O --progress-bar http://archive.apache.org/dist/jena/binaries/apache-jena-2.10.0.zip from /home/iogds/opt

Q: May we try to install the dependencies listed above? (We'll need root for most of them) [y/n] y

[WARNING] Skipping apt-get git git-core b/c no sudo.
[WARNING] Skipping apt-get java openjdk-6-jre b/c no sudo.
[WARNING] Skipping apt-get awk gawk b/c no sudo.
[WARNING] Skipping apt-get curl curl b/c no sudo.
[WARNING] Skipping apt-get rapper raptor-utils b/c no sudo.
[WARNING] Skipping apt-get unzip unzip b/c no sudo.
[WARNING] Skipping apt-get screen screen b/c no sudo.
[WARNING] Skipping apt-get tidy tidy b/c no sudo.
[okay] serdi available at 

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However, the following do not seem to be installed:

[TODO] curl -O --progress-bar http://archive.apache.org/dist/jena/binaries/apache-jena-2.10.0.zip from /home/semantgeo/opt

Q: May we try to install the dependencies listed above? (We'll need root for most of them) [y/n] y

[okay] serdi available at /usr/local/bin/serdi

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Could not find tdbloader on path. Try to install jena at /home/semantgeo/opt? (y/n): y