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tilde's Issues

Broken values for JSON encoding in CRYSTAL output

/home/Evgeny/data/samples/thesis_outputs/
Exception RuntimeError: 'generator ignored GeneratorExit' in <generator object _parse at 0xff9a107c> ignored
Traceback (most recent call last):
File "./utils/entry.py", line 202, in
checksum, error = Tilde.save(calc, session)
File "/home/Evgeny/tilde/tilde/core/api.py", line 570, in save
if len(calc.tresholds) > 1: ormcalc.struct_optimisation = model.Struct_optimisation(tresholds=json.dumps(calc.tresholds), ncycles=json.dumps(calc.ncycles))
OverflowError: Invalid Nan value when encoding double

Very slow DB saving

According to @ansobolev tests, 66% time of the entire parsing is spent in commit, 26% in read. Who is to blame, SQLite, DB schema, api.save() or alchemy?

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