Comments (7)
katrinleinweber
commented on May 27, 2024
Ah, no, sorry! It might not be an issue in the BacDive data, but in the way R expects the escape sequences: jeroen/jsonlite#47. I wonder whether it might be possible to detect an R client, and then deliver \\n instead of \n dynamically?
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katrinleinweber
commented on May 27, 2024
Fixed by cae151d.
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katrinleinweber
commented on May 27, 2024
Whoa! The above dataset doesn't contain that sample any more:
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katrinleinweber
commented on May 27, 2024
Lines 94 to 99 in cae151d
is a bit stupid. There should be a specific purging of invalidly escaped characters, not of all space characters.
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katrinleinweber
commented on May 27, 2024
Since this changes the output datasets, it might as well be the reason to bump the semantic version to 1.0. #14 also supports this.
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katrinleinweber
commented on May 27, 2024
tested with retrieve_data("Bacillus"), which downloaded about 1.3k datasets without escaping errors.
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katrinleinweber
commented on May 27, 2024
No update to v1.0 after all, since some other kinks should be ironed out first (#68, #84, etc). v0.5 it is!
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Related Issues (20)
- Converting retrieve_data() results to a data frame (tibble) HOT 7
- Deploy docu with Travis
- Find smaller examples for docu & test them
- clarify development model: GitHub Flow
- Blank search results and not error when password changed but not in Renviron file HOT 3
- bd_retrieve_by_search output HOT 2
- How to download the full database HOT 3
- R devtools installation hangs on testing for >1 hour HOT 4
- Illegal character error for valid taxa HOT 1
- Failed to install the package HOT 2
- get a null result HOT 1
- installation HOT 1
- Error: lexical error: invalid character inside string HOT 7
- retrieve_data: argument is of length zero HOT 1
- Stop or warn if a dataset doesn't exist?
- Convenience functions for downloading entire domain, phylum, class, order & family
- new API for BacDiveR HOT 3
- Replace httr with crul?
- Reduce dependencies
- Simplify prepare_Renviron() with usethis::edit_r_environ()
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