Thyago L Calvo's Projects
Differential analysis of multiple studies
Transcriptomics meta-analysis of skeletal muscle response to exercise
A tool for phylogenetic interpretation of human mtDNA sequence mixtures
Snakemake workflow for processing Mycobacterium leprae whole genome sequencing data
DE analysis module for Week3
Analyse qPCR data including selection of optimal reference gene(s) and normalisation
Useful bash one-liners for bioinformatics.
Content for the OSCA Book.
The package wrapping the book, for deployment via the Bioconductor build system.
Pairwise comparison tests for one-way designs 🔬📝
Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!
Repository for Programming Assignment 2 for R Programming on Coursera
Biomark Fluidigm qPCR data set: processing and analysis
RCSM(Recommended Connectivity-map Scoring Methods)
RefFinder is a user-friendly web-based comprehensive tool developed for evaluating and screening reference genes from extensive experimental datasets. It integrates the currently available major computational programs (geNorm, Normfinder, BestKeeper, and the comparative ��Ct method) to compare and rank the tested candidate reference genes. Based on the rankings from each program, It assigns an appropriate weight to an individual gene and calculated the geometric mean of their weights for the overall final ranking.
Peer Assessment 1 for Reproducible Research
The R for Mass Spectrometry Initiative home page
RNAseq analysis notes from Ming Tang
RNA-seq workflow using STAR and DESeq2
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
gatk4 RNA variant calling pipeline
Source code for https://rpsychologist.com
Useful tools for working with Salmon output
Statistical Analysis of RNA-Seq Tools
Analysis of single cell RNA-seq data course
React
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