Name: Thyago L Calvo
Type: User
Company: Innovative Genomics Institute, UC Berkeley
Bio: Molecular biology | bioinformatics | programming.
Twitter: othyagoleal
Location: Berkeley, California, USA
Blog: thyagoleal.me
Thyago L Calvo's Projects
Repo for Physalia course Analysis of Single Cell RNA-Seq data
Code and data repository for the 2020 physalia course on single cell RNA sequencing.
Scripts and notes on how to analyse processed NGS data
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
A topic-centric list of HQ open datasets in public domains. PR ☛☛☛
This tool designs guides for use with the base editor technology.
🏆 A ranked list of awesome Python open-source libraries and tools. Updated weekly.
A tiny package manager for crucial unix and bioinformatics tools
:warning: 2018 :warning: Bioconductor Workshops
:microscope: Path to a free self-taught education in Bioinformatics!
Bioinformatics Workbook repository
Introduction to linear mixed models
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
my bin directory
Simulation study of statistical methods for comparing groups – examples and informal evaluations of various statistical significance tests for comparing observations generated from different distributions and families
Script for downloading Coursera.org videos and naming them.
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
CPU usage limiter for Linux
Data Science Specialization at Coursera.org
The Leek group guide to data sharing
A deep learning framework for high-throughput mechanism-driven phenotype screening
This Snakemake pipeline implements the GATK best-practices workflow
:mask:Disease Ontology Semantic and Enrichment analysis
EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence
Automated parsing and data retrieval from .eds files generated by Applied Biosystems qPCR instruments
Visualization of Functional Enrichment Result
Handy genetics-related R scripts
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent