thierrygosselin Goto Github PK

assigner

Population assignment analysis using R

ciee-missing-data-simulations

fqgrep

An approximate sequence pattern matcher for FASTQ/FASTA files.

genomics-workshops

Populations genomics in R, Workshop in Hobart, Tasmania

grur

grur: an R package tailored for RADseq data imputations

lightgbm

A fast, distributed, high performance gradient boosting (GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks. It is under the umbrella of the DMTK(http://github.com/microsoft/dmtk) project of Microsoft.

maverick

Source code for the program MavericK, described fully at www.bobverity.com/maverick

minotaur

Multivariate vIsualisatioN and OuTlier Analysis Using R

missranger

R package "missRanger" for fast imputation of missing values by random forests.

mmod

Differentiation statistics in R

package_data

data files used in stackr and assigner

pbmcapply

Tracking the progress of mc*apply with progress bar.

r_notebook

R_Notebook

radiator

RADseq Data Exploration, Manipulation and Visualization using R

radproc

radseq_cloud_tutorial

This step-by-step tutorial to leverage the cloud to analyse RADseq data

rmetasim

rmetasim population genetic simulation engine

scat

SCAT software for "Smoothed and Continuous Assignment Tests"

send-email-with-r

How to send a bunch of email from R

sfsgbs

SFS with GBS data

skelesim

Null models, performance testing, and power estimation with population simulations

stackr

stackr: an R package to run stacks software pipeline

stacks_workflow

Workflow to work with RAD/GBS data in STACKS

stratag

strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

sunnier

Set of functions to make your day a little sunnier when working with cloud compute engine like Amazon and Google, all inside R.

utility_scripts

Utility script I use

whoa

Where's my Heterozygotes at? Observations on genotyping Accuracy