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dask_relabeling's Introduction

Dask relabeling tool

Relabel is a dask-based relabeling tool for tiled/chunked segmentation of large-scale images.

This tool is able to segment arbitrarily large images (2D and 3D) and merge the labels into a single labeled image.

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dask_relabeling's Issues

Inconsistant label array size

Hi! Thanks for creating this tool! This fills a large need in my workflows.

I am using the tool to parallelize cellpose on an 2-channel WSI.

Interestingly, the label array does not match the XY dimensions of the input array. Any thoughts?

image

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