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View Code? Open in Web Editor NEWMian is a platform for 16S rRNA OTU table visualization, data analysis, and feature selection
Home Page: https://miandata.org
License: MIT License
Mian is a platform for 16S rRNA OTU table visualization, data analysis, and feature selection
Home Page: https://miandata.org
License: MIT License
Hi,
The install instructions in INSTALL.md are outdated.
More specifically, any modern Linux distribution has python >= 3.9
It might be possible to create a conda environment with python 3.6.7 as is required now. Personally, I could not get it to work.
Regards
Taxonomy information is currently limited to the taxonomic levels (eg. phylum, class, order, etc). Some use cases may have additional taxonomic groupings, such as "OTU guilds" which can be an area of investigative interest.
Hi,
Recently i tested Mian for my data. A few things which I think might be very helpful and if possible can be integrated into future versions:
Hope, this might be possible in future versions of Mian. Thanks for the great tool and all the hard work went into Mian.
Request to add a total species accumulation curve for all samples in the data set. Total species on the y and total number of reads on the x.
Mian currently supports ad-hoc filtering which can remove or include certain samples and/or OTUs at the time that the visualization or feature selection tool is run. This is done by design to enable users to quickly 'zoom-in' into certain features of interest or to temporarily exclude outliers.
There may be merit to perform a 'one-time' filtering when the data is being uploaded. This way, users can immediately exclude some samples (eg. perhaps from a mock community) and apply some subsampling over the filtered data set.
Test
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