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adipoatlasscripts's Introduction

Scripts collection for AdipoAtlas project

  • All scripts for data processing is in DataProcessing folder

  • All scripts for data visualization is in DataVisualization folder

  • Scripts are stored by tasks/plots separately.

  • Some raw image outputs might be edited further to add additional labels and markers for the production of the final image in the publication.

License

  • This project is Dual-licensed

    • For academic and non-commercial use: GPLv2 License:

      [The GNU General Public License version 2](https://www.gnu.org/licenses/old-licenses/gpl-2.0.en.html)  
      
    • For commercial use: please contact the develop team by email.

  • Please cite our publication in an appropriate form.

    • Lange, Mike, Georgia Angelidou, Zhixu Ni, Angela Criscuolo, Jürgen Schiller, Matthias Bl€, Maria Fedorova Correspondence, and Maria Fedorova. “AdipoAtlas: A Reference Lipidome for Human White Adipose Tissue.” Cell Reports Medicine 2 (2021). https://doi.org/10.1016/j.xcrm.2021.100407.

Funding

We acknowledge all projects that supports the research of this project:

adipoatlasscripts's People

Contributors

georgiaangelidou avatar zhixuni avatar

Watchers

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adipoatlasscripts's Issues

All_lipids_plots-v2.R: Could not find function fa-all-info

Hi! I would like to try the KMD calculations on my data and first tried to run the script on your results file (AdiposeAtlas_lipidIdentification_05062020.xlsx). The script calls a function "fa_all_info" for the PCs, PEs, PGs, PIs, and DGs, but is not defined. I think it must be missing!

The error message displays as:
Error in fa_all_info(pc_df) : could not find function "fa_all_info"

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