Comments (1)
Base metadata has been revised and filled according to the best available practices and information. Further studies were also added along the way, but it might be worth re-checking into some of these if need arises.
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Related Issues (20)
- Splitting apart OSF portion of TCGA HOT 2
- Purity Estimates HOT 2
- Abida et al focus on polyA / TCGA focus on TPM normalized GEX (OSF) HOT 1
- Risk score benchmarking HOT 1
- Gene ID aliases alter between datasets, especially older annotation ones HOT 2
- Row names HOT 1
- Benchmarking description HOT 1
- Double-checking ranks of newly normalized data HOT 1
- Include normal samples in Taylor et al. HOT 1
- Use the generic identifiers PCA#### / PAN#### in Taylor et al. HOT 1
- Sample IDs in Clinical data - Taylor et.al. HOT 2
- Fusion status HOT 1
- CNA and fusion sample size different in TCGA HOT 2
- Wang et al identifiers mismatch in derived variables HOT 1
- Weiner et al. & newly generated GEX for CIBERSORTx
- Cibersort results for Weiner et al. missing HOT 1
- colData does not work for MAE Barwick HOT 1
- Xenabrowser mapping not up to date HOT 1
- cBioPortal hg19 to hg38 liftOver HOT 1
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