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bwvdnbro avatar bwvdnbro commented on June 15, 2024

The configuration is really looking for the ParMETIS library, so a file called libparmetis.so or libparmetis.a. It will also need the location of the header files metis.h and parmetis.h. In a standard ParMETIS install (I'm looking at the ParMETIS installation on the COSMA cluster in Durham) the directory apps/parmetis/4.0.3 should have 3 subdirectories called bin, include and lib. Passing on apps/parmetis/4.0.3 to configure should then work.
It looks however like this is not the case for you. Either these files are in a different location, or your ParMETIS installation does not include them. I would recommend asking the HPC staff where to find these files.

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pwdraper avatar pwdraper commented on June 15, 2024

Agreed, that list of file is odd. They are mainly the executables of parmetis. The --with-parmetis option should point at
the head of the place that parmetis was installed into. That should look like:

./include
./include/parmetis.h
./include/metis.h
./lib
./lib/libparmetis.so
./bin
./bin/ptest
./bin/mtest
./bin/parmetis
./bin/pometis

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JingyaoDOU avatar JingyaoDOU commented on June 15, 2024

Thank you for the reply, looks like the package was installed weirdly, I will check it with the HPC staff.
Thank you again for your time!

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JingyaoDOU avatar JingyaoDOU commented on June 15, 2024

Dear SWIFT team,

Sorry to bother you again, the HPC staff update the ParMETIS lib, but SWIFT still can't find the lib even though I try all the available lib PATH passing to --with-parmetis. Now the ParMETIS looks like this on the HPC, do you think it might be because of the missing of libparmetis.so and metis.h header file?
parmteis-all
May I also ask something else: how can I turn on the deadtime report of the timesteps_xxx.txt file, I compiled swift on two HPC with basically similarly way but deadtime is somehow not reported in one of the HPC's timesteps.txtfile. I can see deadtime is reported in the output log if I turn to use verbose output 1 ./swift -v 1 , but it's missing in timestep.txt.

Thank you very much for your time and patience!

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bwvdnbro avatar bwvdnbro commented on June 15, 2024

The dead time column was only added to timesteps.txt last week, so if your SWIFT version is older than that, it will not have it. This is not a feature that can be switched on or off.

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pwdraper avatar pwdraper commented on June 15, 2024

I expect it is because of the missing metis.h file. Last time I tried to build parmetis it missed out installing that, so I
copied it into place myself. Re: the missing .so files. You have the .a libraries, so that should work, building the shared
libraries is optional, but I would usually expect it.

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