svsgvarma Goto Github PK

bakta

Rapid & standardized annotation of bacterial genomes & plasmids

cyp51_pacbio

PacBio reads analysis and SNP calling workflow for cyp51

distinct_sequences

Distinct_sequence_generator

example_annotation_scripts

Parse and annotate WGS samples

genome_annotation

These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to follw

gvs.github.io

Test web

macaron

Multi-bAse Codon-Associated variant Re-annotatiON

macaron-genmed-labex

Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)

metaxcan

MetaXcan software and manuscript

parsing-bedfiles-for-ucscbrowser

patterncnv

a versatile tool for detecting copy number changes from exome-seq data

proj_nordic7k-chip

workflow for parsing nordic7k-chip data and blast reads to reference genome

qtl2data

Example data for R/qtl2

rgdb

Resistance Gene Data base Web-server (RGDB_Webserver)

rnaseq

rnaseq_quinoa-seed

Transcriptional regulation of quinoa seed quality

scripts_barley

scripts_benth

transcriptomics

whole-exome-sequencing-scripts

wholegenomesequencing_repeat-mask-annotation

Scripts to filter False Negatives of variants with in the repeat-masking region, and to add gene expression annotations data