I am getting the error shown below after I run the model.predict() line in the twitter chatbot ipynb.
After some searching online I found that this happens when the variables are not initialized, but I am just trying to run your pre-trained model to see how it works.
Is there something I should be doing that's different ? Should I train before I run?
---------------------------------------------------------------------------
FailedPreconditionError Traceback (most recent call last)
/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/client/session.py in _do_call(self, fn, *args)
971 try:
--> 972 return fn(*args)
973 except errors.OpError as e:
/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/client/session.py in _run_fn(session, feed_dict, fetch_list, target_list, options, run_metadata)
953 feed_dict, fetch_list, target_list,
--> 954 status, run_metadata)
955
/Users/ybow_93/anaconda/lib/python3.5/contextlib.py in __exit__(self, type, value, traceback)
65 try:
---> 66 next(self.gen)
67 except StopIteration:
/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/framework/errors.py in raise_exception_on_not_ok_status()
462 compat.as_text(pywrap_tensorflow.TF_Message(status)),
--> 463 pywrap_tensorflow.TF_GetCode(status))
464 finally:
FailedPreconditionError: Attempting to use uninitialized value decoder/embedding_rnn_seq2seq/embedding_rnn_decoder/rnn_decoder/OutputProjectionWrapper/Linear/Bias
[[Node: decoder/embedding_rnn_seq2seq/embedding_rnn_decoder/rnn_decoder/OutputProjectionWrapper/Linear/Bias/read = Identity[T=DT_FLOAT, _class=["loc:@decoder/embedding_rnn_seq2seq/embedding_rnn_decoder/rnn_decoder/OutputProjectionWrapper/Linear/Bias"], _device="/job:localhost/replica:0/task:0/cpu:0"](decoder/embedding_rnn_seq2seq/embedding_rnn_decoder/rnn_decoder/OutputProjectionWrapper/Linear/Bias)]]
During handling of the above exception, another exception occurred:
FailedPreconditionError Traceback (most recent call last)
<ipython-input-32-6ce101760870> in <module>()
1 #sess.run(tf.initialize_all_variables())
2 input_ = test_batch_gen.__next__()[0]
----> 3 output = model.predict(sess, input_)
4 print(output.shape)
/Users/ybow_93/Deep and Machine Learning/Retrieval Based Chatbot/practical_seq2seq-master/seq2seq_wrapper.py in predict(self, sess, X)
173 feed_dict = {self.enc_ip[t]: X[t] for t in range(self.xseq_len)}
174 feed_dict[self.keep_prob] = 1.
--> 175 dec_op_v = sess.run(self.decode_outputs_test, feed_dict)
176 # dec_op_v is a list; also need to transpose 0,1 indices
177 # (interchange batch_size and timesteps dimensions
/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/client/session.py in run(self, fetches, feed_dict, options, run_metadata)
715 try:
716 result = self._run(None, fetches, feed_dict, options_ptr,
--> 717 run_metadata_ptr)
718 if run_metadata:
719 proto_data = tf_session.TF_GetBuffer(run_metadata_ptr)
/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/client/session.py in _run(self, handle, fetches, feed_dict, options, run_metadata)
913 if final_fetches or final_targets:
914 results = self._do_run(handle, final_targets, final_fetches,
--> 915 feed_dict_string, options, run_metadata)
916 else:
917 results = []
/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/client/session.py in _do_run(self, handle, target_list, fetch_list, feed_dict, options, run_metadata)
963 if handle is None:
964 return self._do_call(_run_fn, self._session, feed_dict, fetch_list,
--> 965 target_list, options, run_metadata)
966 else:
967 return self._do_call(_prun_fn, self._session, handle, feed_dict,
/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/client/session.py in _do_call(self, fn, *args)
983 except KeyError:
984 pass
--> 985 raise type(e)(node_def, op, message)
986
987 def _extend_graph(self):
FailedPreconditionError: Attempting to use uninitialized value decoder/embedding_rnn_seq2seq/embedding_rnn_decoder/rnn_decoder/OutputProjectionWrapper/Linear/Bias
[[Node: decoder/embedding_rnn_seq2seq/embedding_rnn_decoder/rnn_decoder/OutputProjectionWrapper/Linear/Bias/read = Identity[T=DT_FLOAT, _class=["loc:@decoder/embedding_rnn_seq2seq/embedding_rnn_decoder/rnn_decoder/OutputProjectionWrapper/Linear/Bias"], _device="/job:localhost/replica:0/task:0/cpu:0"](decoder/embedding_rnn_seq2seq/embedding_rnn_decoder/rnn_decoder/OutputProjectionWrapper/Linear/Bias)]]
Caused by op 'decoder/embedding_rnn_seq2seq/embedding_rnn_decoder/rnn_decoder/OutputProjectionWrapper/Linear/Bias/read', defined at:
File "/Users/ybow_93/anaconda/lib/python3.5/runpy.py", line 184, in _run_module_as_main
"__main__", mod_spec)
File "/Users/ybow_93/anaconda/lib/python3.5/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/ipykernel/__main__.py", line 3, in <module>
app.launch_new_instance()
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/traitlets/config/application.py", line 658, in launch_instance
app.start()
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/ipykernel/kernelapp.py", line 474, in start
ioloop.IOLoop.instance().start()
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/zmq/eventloop/ioloop.py", line 177, in start
super(ZMQIOLoop, self).start()
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tornado/ioloop.py", line 887, in start
handler_func(fd_obj, events)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tornado/stack_context.py", line 275, in null_wrapper
return fn(*args, **kwargs)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/zmq/eventloop/zmqstream.py", line 440, in _handle_events
self._handle_recv()
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/zmq/eventloop/zmqstream.py", line 472, in _handle_recv
self._run_callback(callback, msg)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/zmq/eventloop/zmqstream.py", line 414, in _run_callback
callback(*args, **kwargs)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tornado/stack_context.py", line 275, in null_wrapper
return fn(*args, **kwargs)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/ipykernel/kernelbase.py", line 276, in dispatcher
return self.dispatch_shell(stream, msg)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/ipykernel/kernelbase.py", line 228, in dispatch_shell
handler(stream, idents, msg)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/ipykernel/kernelbase.py", line 390, in execute_request
user_expressions, allow_stdin)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/ipykernel/ipkernel.py", line 196, in do_execute
res = shell.run_cell(code, store_history=store_history, silent=silent)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/ipykernel/zmqshell.py", line 501, in run_cell
return super(ZMQInteractiveShell, self).run_cell(*args, **kwargs)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/IPython/core/interactiveshell.py", line 2717, in run_cell
interactivity=interactivity, compiler=compiler, result=result)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/IPython/core/interactiveshell.py", line 2821, in run_ast_nodes
if self.run_code(code, result):
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/IPython/core/interactiveshell.py", line 2881, in run_code
exec(code_obj, self.user_global_ns, self.user_ns)
File "<ipython-input-29-27a584e39e51>", line 7, in <module>
num_layers=3
File "/Users/ybow_93/Deep and Machine Learning/Retrieval Based Chatbot/practical_seq2seq-master/seq2seq_wrapper.py", line 79, in __init__
__graph__()
File "/Users/ybow_93/Deep and Machine Learning/Retrieval Based Chatbot/practical_seq2seq-master/seq2seq_wrapper.py", line 58, in __graph__
xvocab_size, yvocab_size, emb_dim)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/ops/seq2seq.py", line 357, in embedding_rnn_seq2seq
feed_previous=feed_previous)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/ops/seq2seq.py", line 280, in embedding_rnn_decoder
loop_function=loop_function)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/ops/seq2seq.py", line 146, in rnn_decoder
output, state = cell(inp, state)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/ops/rnn_cell.py", line 587, in __call__
projected = _linear(output, self._output_size, True)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/ops/rnn_cell.py", line 914, in _linear
bias_start, dtype=dtype))
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/ops/variable_scope.py", line 1022, in get_variable
custom_getter=custom_getter)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/ops/variable_scope.py", line 849, in get_variable
custom_getter=custom_getter)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/ops/variable_scope.py", line 345, in get_variable
validate_shape=validate_shape)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/ops/variable_scope.py", line 330, in _true_getter
caching_device=caching_device, validate_shape=validate_shape)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/ops/variable_scope.py", line 676, in _get_single_variable
validate_shape=validate_shape)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/ops/variables.py", line 215, in __init__
dtype=dtype)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/ops/variables.py", line 327, in _init_from_args
self._snapshot = array_ops.identity(self._variable, name="read")
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/ops/gen_array_ops.py", line 1128, in identity
result = _op_def_lib.apply_op("Identity", input=input, name=name)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/framework/op_def_library.py", line 749, in apply_op
op_def=op_def)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/framework/ops.py", line 2380, in create_op
original_op=self._default_original_op, op_def=op_def)
File "/Users/ybow_93/anaconda/lib/python3.5/site-packages/tensorflow/python/framework/ops.py", line 1298, in __init__
self._traceback = _extract_stack()
FailedPreconditionError (see above for traceback): Attempting to use uninitialized value decoder/embedding_rnn_seq2seq/embedding_rnn_decoder/rnn_decoder/OutputProjectionWrapper/Linear/Bias
[ [ Node: decoder/embedding_rnn_seq2seq/embedding_rnn_decoder/rnn_decoder/OutputProjectionWrapper/Linear/Bias/read = Identity[T=DT_FLOAT, _class=[ "loc:@decoder/embedding_rnn_seq2seq/embedding_rnn_decoder/rnn_decoder/OutputProjectionWrapper/Linear/Bias"], _device="/job:localhost/replica:0/task:0/cpu:0" ](decoder/embedding_rnn_seq2seq/embedding_rnn_decoder/rnn_decoder/OutputProjectionWrapper/Linear/Bias ) ] ]