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somascan.db's Introduction

Welcome to my Homapage!

Senior Data Scientist โœจ Machine Learning ๐Ÿš€ Model Development ๐Ÿ”ง Tool Development ๐Ÿ’ป Software Programmer ๐Ÿ“ฆ R Software ๐Ÿ“ˆ Leadership


ย 

About Me

I love to solve problems.

Often the problem can be understanding a complex biological process, but it can also be as simple as fixing something that's broken (e.g. a door that jams, a bicycle, or even machine learning software). In particular, I like to apply my data science skills to better understand, or even solve, the problems we face.

Over the past 12+ years I have combined my statistical knowledge and Open-Source Software tools to solve complex problems in the Life Sciences proteomics (high dimensional) space. In so doing, I have created a comprehensive R-based machine learning analysis ecosystem that standardizes and enables biomarker discovery and predictive model development.

Sometimes the problem is inconsistency across teams or analysts ... thus I promote adherence of "tidy" data principles and am a strong proponent reproducible research and use of bioinformatics pipelines.

Other times the problem can be sharing results across the organization ... thus developing an Application Program Interface (API) infrastructure that enables anyone to access model results with ease.

With my teaching background, I find it important to mentor junior team members while simultaneously leading more senior members. This collaborative spirit is essential to building and effective team that delivers to stakeholders, fosters a sense of accomplishment, and drives revenue generation.

I am always open to discuss possible roles ๐Ÿ”ญ and whether my skill set can solve problems in your space. Please reach out via:

How Where
๐Ÿ“ซ Gmail Badge
โ˜Ž๏ธ 970.631.9838
๐Ÿ”— www.linkedin.com/in/stu-field-sr-data-sci

Skills

Machine Learning ๐Ÿš€ Statistics ๐Ÿ“Š Open-Source ๐Ÿ’ป Software Tools ๐Ÿ”ง
Random Forest Logistic regression R Linux๐Ÿง, MacOS ๐ŸŽ
Naive Bayes Linear regression C++ Git, GitHub :octocat:
Lasso/ridge regression GLMMs Python ๐Ÿ BASH, GNU
k-Nearest neighbour Mixed-effects models LaTeX BitBucket
PCA Survival analysis CI/CD Slack
Ensemble methods Multivariate statistics Docker ๐Ÿ‹ AWS
Maximum Likelihood ANOVA Kubernetes

Additional Skills

  • Analysis of high-throughput, multi-plex, high-dimensional, proteomics assay data
  • Accomplished leader driving small group projects to completion
  • Proven record of accomplishment via publication in peer reviewed, international journals
  • Project development and management, experimental design, and data analysis

Other Interests

  • ๐Ÿ’ฌ Favorite food: ๐ŸŸ ๐ŸŒฎ
  • ๐Ÿ“š I am currently learning woodworking๐Ÿชต ... I'm not very good, but I can make a lot of sawdust!
  • ๐Ÿ’ฌ Ask me about: bikes and R ... I'll talk your๐Ÿ‘‚ off!
  • ๐Ÿšด I'm an avid cyclist: come say hi on

More Details

  • I maintain several R software libraries (๐Ÿ“ฆ) that implement statistical and machine learning techniques in biomarker discovery. Some of my popular published (CRAN) ๐Ÿ“ฆ are:
  • These projects support analyses in the general health care (Life Sciences) space to generate proteomic based clinical insights in health spaces such as:
    • cardiovascular disease
    • liver disease (NASH/NAFLD)
    • alcohol effects
    • biological aging
    • exercise status
    • metabolic disease
  • Favorite techniques:
    • logistic regression (ol' faithful)
    • random forest
    • naive Bayes
    • KKNN (nearest neighbor)
    • survival analyses
    • ensemble methods
  • I am a proponent of the open-source software, conducting the majority of my research/analysis via Linux toolkits, R, and the RStudio IDE.
  • I promote conforming to the adherence of so-called "tidy" data, a philosophy of data science designed to share underlying data structure, grammar, and format which facilitates the generation of reproducible analyses.

๐Ÿ”ง Tools & Languages

๐Ÿ”ง GitHub Commits


๐Ÿ“ˆ GitHub Stats

Stu's GitHub Stats

Contributions


๐Ÿ”— Links & Resources


somascan.db's People

Contributors

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