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docker-example

Build:

podman or docker, e.g. podman build -t mixomics .

Export and load (e.g. for cluster)

Build locally, then export: podman save -o mixomics.tar --format oci-archive mixomics

Load on remote server: podman load < mixomics.tar

Copy to cluster with scp.

Run:

podman or docker, e.g. podman run -it --rm --name mixOmics -v /home/$USER/path_to_R_scripts/:/app/ --entrypoint Rscript mixomics /app/my_script.R

Submit to SLURM:

Wrap code above into Bash script and submit with sbatch my_script.sh.

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