Related Issues (20)
- Repo website link is broken HOT 3
- Consider adding summarize.SingleCellExperiment as an explicit alias of summarise.SingleCellExperiment HOT 1
- adapt aggregate_features() to tidyseurat which is based on ttservice HOT 3
- add join_by function from dplyr
- speed up as_tibble in case I have nested columns in the metadata e.g. TCR
- Speed up `nest` and `unnest` for massive datasets in `tidySingleCellExperiment` HOT 3
- Implement `group_by` and `with_groups` for `tidySingleCellExperiment` and `tidyseurat` HOT 15
- Method for S4 DataFrame for left_join HOT 17
- `tidySCE` Functionality to see and access the altExp slot HOT 18
- `tidySCE` deal with missing assay names
- `tidySCE` Speedup aggregate_cells HOT 2
- `tidySCE`: `slice` masks tidyverse::slice
- Clarification of getting back/disabling the viewing of sce as tibble? HOT 2
- Error from plotting `sce` object: '.abundance_counts' not found HOT 9
- Inconsistency between assay data used and what is advised in SingleR? HOT 10
- Clarifications about `.abundance_counts` HOT 4
- feature request: join_features shape="long" should carry the rowData as well, similarly to `tidySummarizedExperiment`
- [feature request] use cli printing
- aggregate_cells takes too long HOT 2
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from tidysinglecellexperiment.