steffilazerte / urban_motus Goto Github PK

Pilot Phase

Principal Investigators: Barbara Frei, Elizabeth Gow and Krista De Groot
Workflow design: Steffi LaZerte

The code in this workflow is released under GPL3.

This repository contains the workflow for obtaining and filtering Motus track data for the analysis of Urban/Rural stopovers during avian migration.

The reports contains the full annotated code and outputs run as of the dates on each page.

There are two ways to use this workflow

1. Walk through this website, familiarize yourself with the code and outputs [Most users]

2. Modify this workflow by working directly in the qmd scripts used to create this workflow [Some users]

   • To do this, you can either create a PR to the workflow or clone it and work on your own copy.
   • Each qmd file is setup to be run interactively (i.e. in an R session) as well as to be compiled non-interactively to create this script
   • Be warned that compiling the whole site can take a long time, especially if new data is being downloaded!
   • Use renv::restore() to ensure you have the same packages and versions installed in this project to reproduce this workflow.

More details...