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Jianjiao Chen's Projects

rosetta_clone_tools icon rosetta_clone_tools

A public repository with scripts and tools for cloning and setting up RosettaCommons repositories.

saver icon saver

Single-cell RNA-seq Gene Expression Recovery

scater icon scater

Single cell analysis tools for expression from RNA-seq in R

scenic icon scenic

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

sclvm icon sclvm

scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.

simlr icon simlr

Single-cell Interpretation via Multi-kernel Learning (R code in master branch, Matlab code in matlab branch)

single-cell-tutorial icon single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

st_viewer icon st_viewer

A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets

tcgabiolinksgui icon tcgabiolinksgui

TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/

tcgaworkflow icon tcgaworkflow

TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages

tensorflow icon tensorflow

Computation using data flow graphs for scalable machine learning

tensorflow-book icon tensorflow-book

Accompanying source code for Machine Learning with TensorFlow. Refer to the book for step-by-step explanations.

thesis-model-icmc icon thesis-model-icmc

Theses and dissertation model of Instituto de Ciências Matemáticas e de Computação (ICMC).

variant icon variant

Wrap up your bash scripts into a modern CLI today. Graduate to a full-blown golang app tomorrow.

viscello icon viscello

Viscello for Visualization of Single Cell Data

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