pipeline that converts Deepcell generated instance segmentation masks of nuclei from an ome-tiff to Cell Objects with auto-generated cytoplasms in QuPath
Hello, I use this project to divide the image of CODEX, but I encountered a problem. In Step 0: Image Pre-Processing stage, I run Step-0.groovy script in Qupath, but I report the following errors, I don’t Know how to perform subsequent operations, can you provide some help do you provide some help