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atlantis_goa_sdm_sdmtmb_ak

Code to produce spatial distributions of GOA species from RACE-GAP bottom trawl survey data

atlantis_goa_sdm_sdmtmb_bc

Code to produce spatial distributions of GOA species from DFO bottom trawl survey data

atlantis_goa_sdm_sdmtmb_goaierp

Code to create spatial distributions for Atlantis GOA from GOAIERP trawl data and sdmTMB

atlantis_goa_sdm_seabirds

Code to build spatial distributions of seabirds in Atlantis GOA

atlantis_goa_sdm_sharks

Code to build spatial distributions of sharks in Atlantis GOA

atlantis_goa_sdm_steller_sea_lions

Code to build spatial distributions of Steller sea lions in Atlantis GOA

atlantis_goa_sdm_whales

Code to build spatial distributions of cetaceans in Atlantis GOA

atlantis_goa_validation

Code to help with model skill assessment and validation for Atlantis GOA

atlantis_tests

coral_reef_dynamics

Code for temporal changes, spatial analysis, and lagged effects of bare substrate on benthic organisms on a coral reef on Hoga Island (Wakatobi, Indonesia).

doazureparallel

A R package that allows users to submit parallel workloads in Azure

eccwo_poster_figures

Code to produce figures for the Atlantis GOA heatwave poster for ECCWO 2023

esm_ph_pcod

Code to map ESM variables to NMFS areas

exploratoryhoga

fish_school_model

noaa_azure

Code to run Atlantis in batch on Azure (NOAA pipeline)

output_viewer

Collection of scripts to visualise Atlantis GOA runs

paper_1_atlantis_goa

Code to make figures and process output for the first Atlantis GOA manuscript

parallelworks_goa

Code used to set up PW for Atlantis GOA runs

pw_output

r4itn

roms_delta_for_atlantis

Code to perform bias correction with delta method of Atlantis forcing files

roms_to_ecopath

Code to translate ROMS output to Ecopath physical and biogeochemical forcings

rrepo

Repository of R scripts

sponge_assemblage_hoga

Code for the statistical analyses of spatial and temporal changes of a sponge assemblage on Hoga Island (Wakatobi Marine Park,Indonesia)

sponge_reef_structural_complexity

Code for the analysis of differences in structural complexity between sponge-dominated and coral-dominated areas of Indo-Pacific coral reef (Hoga, Wakatobi, Indonesia), as derived from 3D photogrammetry.