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Prediction of beta-strand pairing from direct coupling patterns

License: GNU Affero General Public License v3.0

Python 28.08% Papyrus 71.92%

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Incorrect config paths

Commit b273931 created a bug on my Ubuntu machine.

adenine: felix: ~/develop/bbcontacts > bbcontacts example/1nz0D.mat 0.376 1nz0D -p example/1nz0D.psipred
/home/felix/anaconda/lib/python2.7/site-packages/bbcontacts-1.0-py2.7.egg/bbcontacts

Starting run 1nz0D 0.376
Traceback (most recent call last):
  File "/home/felix/anaconda/bin/bbcontacts", line 9, in <module>
    load_entry_point('bbcontacts', 'console_scripts', 'bbcontacts')()
  File "/home/felix/anaconda/lib/python2.7/site-packages/bbcontacts-1.0-py2.7.egg/bbcontacts/main.py", line 146, in main
    secprobdic = paramshmm.getSecondaryStructureProbabilities(condsecstructprobPSIPREDfile)
  File "/home/felix/anaconda/lib/python2.7/site-packages/bbcontacts-1.0-py2.7.egg/bbcontacts/hmm/paramshmm.py", line 58, in getSecondaryStructureProbabilities
    with open(inputfile,"r") as f:
IOError: [Errno 2] No such file or directory: '/home/felix/anaconda/lib/python2.7/site-packages/bbcontacts-1.0-py2.7.egg/bbcontacts/bbcontacts/paramfiles/secondaryStructureProbabilities_PSIPRED_conditionalwith10000pseudocounts.txt'

I think the paths should be paramfiles/secondaryStructureProbabilities_PSIPRED_conditionalwith10000pseudocounts.txt.

Do you observe the same issue @jessica-andreani ?

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