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Home Page: https://socialgene.github.io
License: MIT License
Python package for creating and interacting with graph databases of protein domains and their genome coordinates
Home Page: https://socialgene.github.io
License: MIT License
When nucleotide ids are not unique across DB, antismash links will be wrong
related to but not the same as #82
sgpy/socialgene/parsers/hmmmodel.py
Line 369 in e4a9cbd
culture_collection
hmm sources
Hi,
Its more a question about not yet documented dbmodifiers
, rather than feature request. Maybe I'm doing something wrong, but...
Is your feature request related to a problem? Please describe.
Running socialgene.cli.neo4j.massage --antismash
creates constraint on (antismash_bgc.nuid, antismash_bgc.region)
, but it seems there is no nuid
property for antismash_bgc
node (am I missing something here?). Therefore re-running the command duplicates all the antismash entries. Can this be prevented? How detected antismash region node can be identified? Currently it has only three properties (start, end, region).
Describe the solution you'd like
nuid
definition?Additional context
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