Comments (7)
Hello,
Is it possible for you to attach your output and error logs ?
That would make the error more clear.
from smilei.
Of course. Please find the output file in the attachment.
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Hi,
We never saw this kind of error, by the way there is, a priori, no usage of MPI_Comm_create_keyval
directly in the code.
Can you gave us some complementary informations such as a description of the supercomputer that you are using ? And if the code runs successfully with a single MPI process and many OpenMP threads ?
If it crashes in this case too, you could run it within a debugger in a debug mode (make config=debug) to identify the origin of the error.
from smilei.
I don't think the error is related, but you have 16 processes with 8 threads each. Total of 128 threads. This is way too much compared to the 16 patches available in the benchmark you choose.
Use 1 process with 16 threads or 2 processes with 8 threads instead.
from smilei.
@jderouillat Sure. The supercomputer I am using consists of 44 Dawning CB85-G AMD blade machine. Each node (machine) has four eight-core 64 bits CPU, which constitute 8 symmetrical multi-processor. The internal memory of each node is 8 GB. The CPUs are Opeteron 6136 (2.4GHz) CPUs, each of which has 16 GB internal memory. The supercomputer uses the RedHat Linux 5.0 operation system.
@mccoys I run SMILEI with a single MPI process and 16 threads, 2 processes with 8 threads for 16 patches. But I still get the same error. Then I run the code in the debug mode. Below is the output file.
smilei.pdf
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Could you execute the debug version within gdb (with only 1 MPI and 1 OpenMP, it will be easier to read the generated informations and OpenMP doesn't matter in your case, the simulation has not entered the OpenMP parallel section when it crashes) :
$ mpirun -np 1 gdb --args .../smilei .../tst1d_00_em_propagation.py
(gdb) run
...
(gdb) backtrace
...
And send us the stack trace of the crash ?
from smilei.
Closing as no more input from user
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