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learning-from-data

Introductory Machine Learning Online Course (MOOC) from Caltech

lianti

Tools to process LIANTI sequence data

libbigwig

A C library for handling bigWig files

libxlsxwriter

A C library for creating Excel XLSX files.

lihang_book_algorithm

致力于将李航博士《统计学习方法》一书中所有算法实现一遍

llama2.c

Inference Llama 2 in one file of pure C

log.c

A simple logging library implemented in C99

maftools

Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.

maftools-1

metalims

MetaLIMS, A Simple Open-Source Laboratory Information Management System for Small Metagenomic Labs

metaphlan

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

mgi-adapters

Trim adapters from MGI sequence data

mntr

Monitor process (and subprocesses if any) mem and cpu usage

msigma

Strain-level Identification of Genomes from Metagenomic Analysis for Biosurveillance

ngmerge

Merging paired-end reads and removing adapters

nnls

Non-negative Least Square Algorithm

pandora

Pan-genome inference and genotyping with long noisy or short accurate reads

patchelf

A small utility to modify the dynamic linker and RPATH of ELF executables

pathogen-lists

Lists of human pathogens from literature and web

pggb

the pangenome graph builder

platypus

Platypus Variant Caller

py2bit

A python library for accessing 2bit files

pybam

Very simple, pure python, BAM file reader

qdnaseq

QDNAseq package for Bioconductor

qdnaseq.hg38

QDNAseq bin annotation for hg38

rascal

R package and Shiny app providing functions for scaling relative copy number to absolute values for shallow whole genome sequencing of cancer samples.

reproduce_lucas_wflow

rmath

Statistical Distributions from R

sample

Performs memory-efficient reservoir sampling on very large input files delimited by newlines

samstat

SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.