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filmdosimetryanalysis's Issues

Update modules to use markups instead of annotations

Annotations module, which provides vtkMRMLAnnotationROI and vtkMRMLAnnotationRuler nodes have been deprecated since April 2021 and will be removed in Slicer-5.4 stable version early next year.
Since some modules in this extension use annotation nodes, these modules need to be updated to use markups nodes before the end of this year.

This section of the migration guide should help with implementing the changes and any questions can be asked at the Remove Annotations module topic in the Slicer forum.

Impacted modules:

  • FilmDosimetryAnalysis\FilmDosimetryAnalysisLogic\FilmDosimetryAnalysisLogic.py
  • FilmDosimetryAnalysis\FilmDosimetryAnalysis.py

Add options to pre-align film image in film slicelet

Films can be scanned in a wide variety of orientaitons, and the hard-coded pre-alignment transformations do not cover these setups. It is needed to add controls for rotation and flip, and also fine-tuning after registration

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