shexspec / grammar-python-antlr Goto Github PK

I had to add chardet to my project (coming from https://github.com/SuLab/WikidataIntegrator and going down dependencies).

When using rdflib 6.2 and pyshex 0.8.1, I get a DeprecationWarning from pyshexc because rdflib-jsonld is deprecated.

>>> import rdflib
>>> import pyshex
/home/stain/miniconda3/envs/validate/lib/python3.11/site-packages/rdflib_jsonld/__init__.py:9: 
DeprecationWarning: The rdflib-jsonld package has been integrated into rdflib as of rdflib==6.0.0.  Please remove rdflib-jsonld from your project's dependencies.
  warnings.warn(
>>> rdflib.__version__
'6.2.0'

This is caused by pyshexc/rdflib/contextcache.py

from rdflib_jsonld import util

This means my command line tool that uses pyshex always outputs the warning, but I have no control over its import of rdflib_jsonld. This also affects PyShex' command line tool shexeval

There is no way to turn off the warnings with warnings.filterwarning, as rdflib_jsonld rudely overrides the warnings manager using warnings.catch_warnings.

In [1]: import sys 
   ...: from pyshexc.parser_impl.generate_shexj import generate 
   ...:  
   ...: generate(['shexset/molbio/E37'])                                                               
RDFLib Version: 5.0.0
ANTLR runtime and generated code versions disagree: 4.9!=4.7.2
ANTLR runtime and generated code versions disagree: 4.9!=4.7.2
JSON output written to shexset/molbioE37.json
turtle output written to shexset/molbioE37.ttl

PR in preparation.

The 0.8 branch of PyShEx has dropped support for Python 3.6 and earlier. This turns out to be a real problem for the wikidataintegrator, so we need to re-introduce 3.6 support

Running produces:

The ANTLR has to match the runtime -- the Pipfile requirements must include minor version:
ANTLR runtime and generated code versions disagree: 4.8!=4.7.1

Same as:
hsolbrig/PyShEx#67
hsolbrig/PyShEx#65

ralf@ark:~/wikidata/grammar-python-antlr/scripts> . genpython.sh
cp: cannot stat '../../grammar/ShExDoc.g4': No such file or directory
error(7):  cannot find or open file: ShExDoc.g4
rm: cannot remove 'ShExDoc.g4': No such file or directory

Why is this script reaching outside the repo directory? Where do I get ShExDoc.g4 ?