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somaticsignatures

The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-throughput experiments.

spacevim

A community-driven modular vim distribution - The ultimate vim configuration

spatial-bonemarrow-atlas

This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Proteomic Profiling Reveals the Cellular Composition and Spatial Organization of the Human Bone Marrow Microenvironment"

spatialdlpfc

spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples

spatially-resolved-transcriptomics-of-macrophage-heterogeneity-and-prognostic-significance-in-dlbcl

spatialtranscriptomics

Spatial Transcriptomic Analysis of OSCC samples

spatial_analysis

spatial_brain_cancer

spatial_glioma

Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper

speedseq

A flexible framework for rapid genome analysis and interpretation

spf13-vim

The ultimate vim distribution

star

RNA-seq aligner

star-fusion

STAR-Fusion codebase

starfysh

Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology

starfysh_reproducibility

stereopy

A toolkit of spatial transcriptomic analysis.

super-rna-splicing-entropy-drives-stepwise-leukemogenesis

Super RNA splicing entropy drives stepwise leukemogenesis

svtools

tabix

Note: tabix and bgzip binaries are now part of the HTSlib project.

taiji

All-in-one analysis pipeline

tcat_analysis

Code repository for TCAT analyses

tcgaworkflow

TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages

tcga_example

tcm

Codes used in pan-T cell analysis

tensorlayerx

TensorLayerX: A Unified Deep Learning and Reinforcement Learning Framework for All Hardwares, Backends and OS.

test

test2

theta

Tumor Heterogeneity Analysis (THetA) is an algorithm that estimates the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data.

thu-cst-cracker

清华大学计算机系课程攻略 Guidance for courses in Department of Computer Science and Technology, Tsinghua University

tidyverse120

玩转数据处理120题—R语言tidyverse版本