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fishHook

R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in arbitrary (sets of) genomic intervals after correcting for genomic covariates, e.g. replication timing, sequence context, chromatin state.

License: GPL v3

Installation

  1. Install devtools from CRAN (if you don't have it already)
install.packages('devtools')
  1. Install gUtils
devtools::install_github('mskilab/gUtils')
  1. Install fishHook
devtools::install_github('mskilab/fishHook')

Documentation

fishHook Tutorial

fishHook Developer Reference

Attributions

Marcin Imielinski - Assistant Professor, Weill-Cornell Medical College. Core Member, New York Genome Center.

Zoran Gajic - Undergraduate Research Assistant, Rutgers University, Weill Cornell Medicine, New York Genome Center.

fishhook's People

Contributors

zoranzg avatar evanbiederstedt avatar imielinski avatar xtyao avatar stevenschumacher avatar walaj avatar

Watchers

James Cloos avatar

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