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corgie

Command line tool for registration of very large 3D volumes.

corgie_deprecated

corgie_release_deprecated

crackle

3D dense segmentation compression codec based on crack codes.

cross-section

Tools for computing properties of cross sections of 3D voxelized images.

dafdockerparty

data-cube-x

JS biomedical 3D image stack. Fast CPU rendering. Easy web app integration.

datajoint_seung

Datajoint databases in Seung Lab.

dataprovider3

DataProvider for Python3

datastore-flex

Datastore with objects support

datatools

A C++ extension to DataProvider

deepem

Deep Learning for EM Connectomics

deflate

Python extension wrapper for libdeflate.

devoem

Dense Voxel Embeddings for EM Connectomics

dijkstra3d

Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes

disjoint-set-ts

Interview question for Typescript developers.

docopt.c

C-code generator for docopt language.

draco

Draco is a library for compressing and decompressing 3D geometric meshes and point clouds. It is intended to improve the storage and transmission of 3D graphics.

dracopy

Python wrapper for Google's Draco mesh compression library.

dvidarrays.jl

Julia cliend to DVID for Distributed, Versioned, Image-oriented Dataservice

dynamicannotationdb

e2198-gc-analysis

Release of connectomics analysis of Ganglion cells traced in e2198.

e2198_ca_imaging

Cell clustering and calcium imaging analysis of e2198

e2198_reconstruction

Data and code for visualizing connectomics reconstructions of e2198.

em_coregistration

align a 3D data set to another

emannotationschemas

Repository to hold schemas for annotations of volumetric imaging data focused on EM

emirt

EM Image Reconstruction Tools using Python

emirt.jl

Electronic Microscopy Image Reconstruction Toolbox using julia language

errodactyl

Sparse error-detection inference engine

euclidean-distance-transform-3d

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.