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View Code? Open in Web Editor NEWtools for BEDPE-style peaks
License: MIT License
tools for BEDPE-style peaks
License: MIT License
peaktools/peaktools/merge_dot_lists_KDTree.py
Line 171 in a5c1157
as of 724a2db compare_dot_lists
cannot handle a situation when either of these m1_gw , nm1_gw, m2_gw, nm2_gw
is empty, because of m1_gw.groupby('chrom1').size().loc[common_chroms].values
-style operations
peaktools/peaktools/compare_dot_lists.py
Line 377 in 724a2db
they all fail , while doing this ...size().loc[common_chroms]...
peaktools/peaktools/lib/intersect_dots.py
Line 147 in 0c38faf
dynamic_id_thresold
- should be get_identity_thresold
....
if lists are of different size - they simply return yes or no
if lists are sorted differently - they'd also return yes or no - this isn't good
fix it to a comparison of sorted chroms lists ...
peaktools/peaktools/merge_dot_lists_KDTree.py
Line 101 in de17c75
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