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Scientific computing resources in phenology research

This is a list of software, data, and other resources to use in phenology research studies

Data Retrieval Software

  • vegindex | github - Python package to generate vegetation index timeseries from PhenoCam images.

  • phenodata | github | homepage- A data acquisition and manipulation toolkit for open access phenology data

  • phenor | github | homepage - A phenology modelling framework in R

  • rnpn | cran | github - R client for the National Phenology Network database API

  • Data Retriever | github | homepage - Data download tool which includes National Phenology Network access

  • rppo | github - Tool to access NPN, NEON, and PEP725 data in the format of the Plant Phenology Ontology.

Modelling software

  • phenor | github | homepage - A phenology modelling framework in R

  • pyPhenology | github - Plant phenology models in python with a scikit-learn inspired API

  • phenology | cran - Functions used to fit and test the phenology of species based on counts. (in R)

  • chillR | cran - Statistical Methods for Phenology Analysis in Temperate Fruit Trees. (in R)

Data sources

  • National Phenology Network | homepage - Citizen science organization in the United States that collects phenology observations

  • NECTAR Database | homepage - Compiliation of many smaller phenology datasets

  • PEP725 | homepage - Pan European Phenology Project

  • PhenoCam | Publication | data download | homepage - An ecosystem phenology web camera network

  • MCD12Q2 | homepage - The MODIS Land Cover Dynamics product, which includes phenological transition dates (ie. green up/down)

  • The Plant Phenology Ontology | Paper - A new informatics resource for large-scale integration of plant phenology data

  • Dataset list on NPN | homepage - Long list of datasets available by request. Hosted by the National Phenology Network

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