analysis of DMS3vir data
LIMS8810 Contains rough code for the anaysis of DMS3vir experiment. Outline as follows: Download 2x 250bp MiSeq reads. Create high quality reads with flash map with bwa mem to both host and phage Find SNPs in DMS3vir Pass to R Select SNPs in 10bp region (8bp of 'seed' spacer + 2 PAM) sum allele frequencies for each spacer in each population
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