Comments (2)
Got the error message but not the actual system
signal (11): Segmentation fault
in expression starting at /home/runner/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl/test/identifiability.jl:1
__gmpn_addmul_1_coreisbr at /opt/hostedtoolcache/julia/1.6.2/x64/bin/../lib/julia/libgmp.so (unknown line)
Allocations: 142121517 (Pool: 142060673; Big: 60844); GC: 144
ERROR: Package StructuralIdentifiability errored during testing (received signal: 11)
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:55
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1693
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Symbol, IOContext{Base.PipeEndpoint}, Tuple{Symbol}, NamedTuple{(:io,), Tuple{IOContext{Base.PipeEndpoint}}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:343
[4] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{Base.PipeEndpoint}, kwargs::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:coverage,), Tuple{Bool}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:80
[5] test(; name::Nothing, uuid::Nothing, version::Nothing, url::Nothing, rev::Nothing, path::Nothing, mode::Pkg.Types.PackageMode, subdir::Nothing, kwargs::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:coverage,), Tuple{Bool}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:96
[6] top-level scope
@ none:1
identifiability:
from structuralidentifiability.jl.
I will close this because after updating GroebnerBasis.jl to 0.3.3 the issue stopped hapenning. The relevant PR will also be closed. If the problem appears again we can always reopen.
from structuralidentifiability.jl.
Related Issues (20)
- Initial conditions HOT 2
- Function exp is not supported HOT 4
- Global identifiability does not work properly HOT 3
- ode for input HOT 7
- Rationalizing input model
- expression which is not an ODE HOT 1
- SymbolicUtils v1 upgrade HOT 2
- Write how to define models with MTK HOT 3
- Working directly on expressions for local identifiability
- Structural identifiability analysis fails for composed MTK model HOT 12
- Fixed initial conditions: local identifiability
- Fixed initial conditions: global identifiability HOT 1
- Spelling error in documentation HOT 1
- Algebraic function in the ODE for structural analysis? HOT 1
- Structural Analysis for algebraic difference equations (DiscreteSystem) HOT 13
- Support for tensor definition, as per `Symbolics.jl`, of variables HOT 4
- Advice on getting global identifiabiltiy to work for a relatively small (?) system HOT 2
- Error when attempting identifiability analysis on system with parameter in exponent. HOT 2
- ModelingToolkit Workflow only returns Parameter Identifiability HOT 2
- Need for a new release HOT 3
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from structuralidentifiability.jl.