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Hi,

I got this error in the last step to set up the environment.

Microsoft Visual C++ 14.0 or greater is required. Get it with "Microsoft C++ Build Tools": https://visualstudio.microsoft.com/visual-cpp-build-tools/

But I can find Microsoft Visual C++ 14.25 and 14.29 in my apps list. Any advice?

Best,
Shuai

Hi,

When I test the demo data, everything look good. But when I run my own data with ~18000 genes and 4 samples under each condition, I got MemoryError after 296 minutes of running.

Here are details about my windows laptop:
Processor Intel(R) Core(TM) i7-8750H CPU @ 2.20GHz 2.21 GHz
Installed RAM 32.0 GB (31.7 GB usable)
System type 64-bit operating system, x64-based processor

The demo data contains only hundreds of genes, so have you tried whole transcriptome data? How can I avoid this kind of error? If 32 GB memory is not large enough, what's the right memory size for my study?

Shuai

The address on the instruction won't work for me.
git clone https://github.com/gihannagalindez/boostdiff_inference/.git && cd boostdiff_inference

I tried this one and it works for me:
git clone https://github.com/gihannagalindez/boostdiff_inference.git && cd boostdiff_inference

Hi,

I smoothly tried the demo data and got the output txt files, I have no idea how to plot the similar network in your preprint . Can you give a hint on how to do this from the txt out put files?

Shuai

Hi Gihanna,

Awesome tool :)

I am not sure if it is a 'me' -problem, but I had to modify the postprocessing script in line 166-168 to include nx.nx_pydot.graphviz_layout() , and install the respective packages to make the visualization work.

postprocessing.py
line 166-168:

   elif layout == 'graphviz_layout':
        # https://networkx.org/documentation/stable/reference/generated/networkx.drawing.nx_pydot.graphviz_layout.html
        pos = nx.nx_pydot.graphviz_layout(G, prog='sfdp')

It works now, but it could potentially be a bug.
Best,
Anne