schaudge Goto Github PK
Name: Schaudge
Type: User
Bio: MathInforBioist
Location: Shanghai, PRC
Schaudge's Projects
scanpy
Single-cell analysis in Python. Scales to >1M cells.
scater
A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control and visualization.
scbert
Cell Type Annotation of Single-cell RNA-seq Data
scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
scikit-learn
scikit-learn: machine learning in Python
scipy
SciPy library main repository
scmerge
Statistical approach for removing unwanted variation from multiple single-cell datasets
scorecard
OpenSSF Scorecard - Security health metrics for Open Source
scrambler
Interpretation by Deep Generative Masking for Biological Sequences
scrooge
Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improvements on top of GenASM, and high-performance CPU and GPU implementations. Described by Lindegger et al. at https://doi.org/10.48550/arXiv.2208.09985
scvi-tools
Deep probabilistic analysis of single-cell omics data
sdm
Fast tool for sequence related tasks
sds
Simple Dynamic Strings library for C
sdsl-lite
Succinct Data Structure Library 2.0
seaweedfs
SeaweedFS is a fast distributed storage system for blobs, objects, files, and data lake, for billions of files! Blob store has O(1) disk seek, cloud tiering. Filer supports Cloud Drive, cross-DC active-active replication, Kubernetes, POSIX FUSE mount, S3 API, S3 Gateway, Hadoop, WebDAV, encryption, Erasure Coding.
sepp
Ensemble of HMM methods (SEPP, TIPP, UPP)
seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
seqlib
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
seqtk
Toolkit for processing sequences in FASTA/Q formats
sequila
SeQuiLa: Distributed analytics for genomics based on Apache Spark!
seqwish
alignment to variation graph inducer
seurat
R toolkit for single cell genomics
sge
Some Grid Engine
shark
The Shark Machine Leaning Library. See more:
sibeliaz
A fast whole-genome aligner based on de Bruijn graphs
skani
Fast, robust ANI and aligned fraction for metagenomic genomes and contigs.
sketch
C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings
sleuth
Differential analysis of RNA-Seq
smol
A small and fast async runtime for Rust
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