sara-nl / 3d-vq-vae-2 Goto Github PK
View Code? Open in Web Editor NEW3D VQ-VAE-2 for high-resolution CT scan synthesis
Home Page: https://scripties.uba.uva.nl/search?id=722710
3D VQ-VAE-2 for high-resolution CT scan synthesis
Home Page: https://scripties.uba.uva.nl/search?id=722710
Happy to report I was able to train a VQ-VAE using a dataset. Very cool to see - and kudos for the nice Tensorboard outputs you have in place! ๐
Do you have any suggestions or code for randomly sampling from the decoder in a generative fashion?
Also, If you have a summary of these files and their purpose, that would be very helpful. I would be happy to do a PR with some comments in the repository if that would be helpful.
Questions on:
calc_ssim_from_checkpoint.py # does this calculate SSIM across the dataset โ
decode_embeddings.py # Specifications for db_path โ
extract_embeddings.py # Does this save embedding to disk โ
Ran successfully:
plot_from_checkpoint.py # plots a forward pass from a random sample โ
train.py # trains a model โ
Much appreciated!
-Akshay
When installing the dependencies, I am getting:
$ conda env create -f environment.yml
Collecting package metadata (repodata.json): done
Solving environment: failed
ResolvePackageNotFound:
- torchvision==0.9.0.dev20210122=py38_cu110
- pytorch==1.8.0.dev20210122=py3.8_cuda11.0.221_cudnn8.0.5_0
Any ideas?
Hello,
I wanted to confirm the steps for training a VQ-VAE on radiology data. Thank you for working on such an interesting and important application of VQ-VAE. Our research group is particularly interested in applications to oncologic imaging.
1. Sample data
2. Training
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.